Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120455X.Seq
         (387 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   1.4  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   1.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   9.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 31  RQHHPPRRHNGSPSGNRHQQ 90
           RQ  PP  + G PSG +  Q
Sbjct: 57  RQGIPPHHYGGPPSGGQPPQ 76


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 43  PPRRHNGSPSGNRHQQFPSQASTLP 117
           P    + SPSG+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 43  PPRRHNGSPSGNRHQQFPSQASTLP 117
           P    + SPSG+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -2

Query: 227 CWREC 213
           CWREC
Sbjct: 885 CWREC 889


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 343 RSQGQADFVGCLCHE 299
           R Q Q  F G  CHE
Sbjct: 53  RCQCQPGFTGKYCHE 67



 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 181 RSQGQADFVGCLCHE 137
           R Q Q  F G  CHE
Sbjct: 53  RCQCQPGFTGKYCHE 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,412
Number of Sequences: 336
Number of extensions: 1712
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)