Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120455X.Seq
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   3.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   7.2  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 210 TKLVKAMLSAEARDKLTLLVVY 145
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185



 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 372 TKLLKAMLSAEARDKLTLLVVY 307
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 367 IVESHAKRRSQGQADFVGCLCHELGIY 287
           ++ES  +R   G  D    L H+LG+Y
Sbjct: 742 LLESDTQRLIMGFRDLTQVLAHDLGMY 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,917
Number of Sequences: 5004
Number of extensions: 26101
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)