Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120455X.Seq
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002...    28   2.2  
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996...    27   5.2  
03_04_0174 - 18044516-18046327                                         26   9.1  
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709...    26   9.1  
01_06_1026 + 33907465-33907661,33907699-33907741,33907938-339085...    26   9.1  

>03_06_0523 +
           34499533-34499705,34499808-34499917,34500037-34500224,
           34500984-34501451
          Length = 312

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  RQHHPPRRHNGSPSGNRHQQFPSQA 105
           R H PP  H   PS    Q+FP +A
Sbjct: 178 RHHEPPMSHKKFPSSAGEQRFPDRA 202


>12_01_1019 -
           10398880-10399314,10399401-10399481,10399560-10399652,
           10399784-10399999,10403837-10403935,10404244-10404867,
           10404946-10405033,10405167-10405430,10406437-10406504
          Length = 655

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 31  RQHHP-PRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQL 168
           R H P P R   S S N +QQ   + ++   +   Q + +  QQ+QL
Sbjct: 549 RGHGPKPNRRASSTSANTYQQMEEELASTKQTAAVQQNQLAVQQNQL 595


>03_04_0174 - 18044516-18046327
          Length = 603

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = +1

Query: 7   LLRLAWLSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHD 144
           L RL  L   HH     + SP    H+ +PS   +         H+
Sbjct: 4   LFRLVSLHHHHHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHN 49


>02_05_1335 -
           35770403-35770543,35770630-35770755,35770859-35770942,
           35771444-35771656,35771759-35771977
          Length = 260

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 7   LLRLAWLSRQHHPPRRHNGSPSGNRHQQFPSQ-ASTLPI 120
           LL L    RQH   R+H+ S S  +H++  S    T P+
Sbjct: 190 LLALLEKERQHRSERKHSSSASTTKHKRKSSSLKDTSPV 228


>01_06_1026 +
           33907465-33907661,33907699-33907741,33907938-33908512,
           33910820-33911693
          Length = 562

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 37  HHPPRRHNGSPSGNRHQQFPSQA 105
           HHP R H  +  GNR  Q P  A
Sbjct: 108 HHPTRPHTATSPGNRALQPPGLA 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,057
Number of Sequences: 37544
Number of extensions: 196911
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)