Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120455X.Seq
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   27   5.3  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.3  

>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 19  AWLSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDI 147
           A LS    PP++++G+P  +      S +S+   SG    H +
Sbjct: 388 ALLSSPRTPPQQYSGTPHSSLQGSRTSYSSSTSFSGNSSTHSV 430


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 66  P*WKPPSAISVTSFNFT 116
           P W+PP A+ V +F+FT
Sbjct: 52  PDWQPPFAVDVENFHFT 68


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +1

Query: 46   PRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGF 180
            PR      SG+      S    +P SGK Q  D  N+Q     GF
Sbjct: 1198 PRGEGEEKSGSSGSSMESSPQGMPASGKTQITDNPNKQPGFPGGF 1242


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 50  LGGWCWRESHAKRRS 6
           LG  CWRES+  RRS
Sbjct: 436 LGNDCWRESYTARRS 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,376,427
Number of Sequences: 59808
Number of extensions: 205816
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)