Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120455X.Seq
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67035.1 68414.m07623 expressed protein ; expression supporte...    27   4.4  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    27   4.4  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    27   5.8  
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)...    27   5.8  
At3g22020.1 68416.m02778 receptor-like protein kinase-related co...    26   7.6  
At3g12420.1 68416.m01547 hypothetical protein                          26   7.6  
At2g19670.1 68415.m02299 protein arginine N-methyltransferase, p...    26   7.6  

>At1g67035.1 68414.m07623 expressed protein ; expression supported
           by MPSS
          Length = 229

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 112 KLKLVTEIADGGFH*GSRYG 53
           KLKL+ +  D GF  GSRYG
Sbjct: 26  KLKLLVDNGDYGFERGSRYG 45


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 34  QHHPPRRHNGSPSGNRHQQFPSQASTLP 117
           Q  PP+  N SPS + H Q P+  S  P
Sbjct: 772 QSPPPKGCNDSPSNDHHYQTPTPPSLPP 799


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 43  PPRRHNGSPSGNRHQQFPSQASTLP 117
           PP   N  P    HQ  P QA+T P
Sbjct: 877 PPSLSNKPPLAQNHQPVPGQATTRP 901


>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
           identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
           4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
           thaliana}
          Length = 702

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 125 PDMGKVEACDGNC*WRFPLGEPLWRLGGW 39
           P        DG+C W   L   L+R+ GW
Sbjct: 20  PSSVSTAVVDGSCHWSPSLSSSLYRIDGW 48


>At3g22020.1 68416.m02778 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function; weak similarity to receptor-like protein
           kinase 5 (GI:13506747) [Arabidopsis thaliana]; weak
           similarity to receptor-like protein kinase homolog
           RK20-1 (GI:4530126) [Phaseolus vulgaris]
          Length = 223

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 231 MVLARVSTKLVKAMLSAEARDKLTLLVVYVMSL 133
           M +   +  LVK  +S EAR + TL++  ++SL
Sbjct: 1   MRICTTNASLVKGNISREARTRKTLIISSIISL 33


>At3g12420.1 68416.m01547 hypothetical protein
          Length = 308

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 37  HHPPRRHNGSPSGNRH---QQFPSQASTLPISGKFQAHDI 147
           HHPPR ++ +P  NR+      P      P   ++ A+D+
Sbjct: 84  HHPPRSYDPNPPPNRYYSDHHPPRSYDRNPPPNRYDANDL 123


>At2g19670.1 68415.m02299 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 1 [Homo sapiens] GI:7453577
          Length = 366

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  HGFHANTIHRDAITAPLVETAISN 91
           +GF  + I R AIT PLV+T   N
Sbjct: 215 YGFDMSCIKRRAITEPLVDTVDGN 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,004,018
Number of Sequences: 28952
Number of extensions: 149208
Number of successful extensions: 380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)