Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120454.Seq
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    30   0.31 
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    30   0.41 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.94 
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    27   2.2  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   5.0  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   5.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   5.0  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   8.8  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   8.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   8.8  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   8.8  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 24  QIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 197
           QI     +RGN +  +PPPPL Y  P   AT    NA   NNA      TT  N  +   
Sbjct: 48  QIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYA 104

Query: 198 SNSTNSVA 221
           ++ ++ +A
Sbjct: 105 NDYSSELA 112


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +2

Query: 248 TDVDAGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLMIHFINT 376
           T + AGE++ Y      N+C+ F+ +  R ++C D +E   L+  F+NT
Sbjct: 493 TFIKAGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +3

Query: 66  NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 245
           +TPPP   +PS   T+  T++   +     +P  + + K  ++ S +    A      S 
Sbjct: 690 STPPPTTSFPSTFTTSFITSSSLSS-----IPNNSTEVKTASTSSGTEIKTASTSSGSSS 744

Query: 246 EPTSTPANLFGTT 284
             + TPA+   TT
Sbjct: 745 SSSYTPASSTSTT 757


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 195 RSNSTNSVAIAPYNKSKEPTSTPANLFGTTNVWILFKKLLDITGAM 332
           R   T  + +    K++E    P +  GT+NV+   K  L+++G +
Sbjct: 176 RDPHTQEIVLQGLMKAQEDFKGPGSFLGTSNVYFAAKYNLNVSGTV 221


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 577 FYNGGADMLGKDALAEAAKQLSLA 648
           FY    ++ GK  LAEAAKQ+ ++
Sbjct: 49  FYIPSFNLFGKGCLAEAAKQIKMS 72


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 553 NLAQTMPEIYSNRSAGLGRVALSQLFLQPN 464
           N+   MPEI  ++  G  R+ L   F QPN
Sbjct: 435 NVVVYMPEIDKDKLGGTMRLGLRPTFFQPN 464


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 78  PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 221
           PP+  P+  +    TN+   ++A G+ PP     K++  RS+S N  A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 18  RVQIKSMTDERGNFYY-NTPPPPLRYPS 98
           R+Q+   T   G++ + N PPP LR P+
Sbjct: 63  RLQLYKKTISEGDYNFDNVPPPELRTPT 90


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 75  PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 254
           P P    S+P T+   +    +    Y  P ++    DT  S   N+  +AP   +  P 
Sbjct: 578 PDPSAKASSPVTSKGVSINEKSAVNNYATPLSKPQPKDTKGSKLGNTF-VAPSPAASLPA 636

Query: 255 STP 263
           S P
Sbjct: 637 SPP 639


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 164 YDARQQNGHEPQQQHKLGSDRTVQQEQR 247
           Y   QQN  E  Q HK   D+   QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 48   RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 143
            RG  Y N PP    Y SN         ++YNN
Sbjct: 953  RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,040
Number of Sequences: 5004
Number of extensions: 62315
Number of successful extensions: 266
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)