Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120453.Seq
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     27   4.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.3  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    25   9.3  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 133 FIKVKCIVFKKTQNITKDHYK*CIIIIILNATLYNAVINVGIV 261
           FI+V   +   T+  T   Y+  ++ +I+NA  YN  +++G++
Sbjct: 778 FIEVAGNLLLVTEKPTSQTYRVFLLEVIINALYYNPSMSLGVL 820


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 428 EFEASIQLCENSYNSNGFFFP 366
           ++  S++LC N +N + FF P
Sbjct: 320 DWAKSVRLCANRFNKSNFFIP 340


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 356 LIRVEKKNHWNYMNFHKVEYWLRIQI 433
           L+R  +KN WN + F+ +  W+ +++
Sbjct: 77  LMRESEKNAWNGVIFYMIGVWIVLKV 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,033
Number of Sequences: 5004
Number of extensions: 64796
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)