Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120451.Seq
         (715 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            24   4.1  
DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.      24   4.1  
EF519475-2|ABP73560.1|  177|Anopheles gambiae CTL4 protein.            23   9.5  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   9.5  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 120 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG 224
           + +L L+G    GK++ V     GQF E    T+G
Sbjct: 24  QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 58


>DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.
          Length = 353

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 114 KEEMELTLVGLQYSGKTTFVN----VIASGQFSED 206
           + E++L L+G   SGK+TF+     +  SG   ED
Sbjct: 31  RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 65


>EF519475-2|ABP73560.1|  177|Anopheles gambiae CTL4 protein.
          Length = 177

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 340 HNSIDPSAITLPH*TESWLATN 275
           +N ++PS + +   T SW+AT+
Sbjct: 144 NNRVEPSCVYIQGSTMSWVATS 165


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +2

Query: 290  RFRSMWERYCRGVNAIVYMVDAA---DPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRD 460
            + +  W+  C  + A   + + A   DP+ +  +RN+L ++  + Q         G +  
Sbjct: 1016 KLQRCWDDECAILAAQAMLEEPANRLDPEAVRCTRNDLRNVARRTQTVRQREEQCGERPS 1075

Query: 461  LPQALDEHGLIERMNLQRSRTAR 529
            +P +       ER    R+R AR
Sbjct: 1076 MPSSSPRTS--ERRANIRARMAR 1096


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,820
Number of Sequences: 2352
Number of extensions: 13185
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)