Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120449.Seq
         (610 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5DEI3 Cluster: SJCHGC09342 protein; n=1; Schistosoma j...    34   3.0  
UniRef50_Q5CUF2 Cluster: WD-40 repeat protein, SMART LisH domain...    34   3.0  
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=...    34   3.0  
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|...    33   4.0  
UniRef50_P19109 Cluster: ATP-dependent RNA helicase p62; n=9; Eu...    33   5.3  
UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4; F...    33   7.0  
UniRef50_Q9SWV9 Cluster: Ethylene-responsive RNA helicase; n=5; ...    32   9.3  

>UniRef50_Q5DEI3 Cluster: SJCHGC09342 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09342 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 224

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMA 76
           RQA+DL+ +L EANQ I+P+L  +A
Sbjct: 60  RQARDLIEILDEANQEITPELIQLA 84


>UniRef50_Q5CUF2 Cluster: WD-40 repeat protein, SMART LisH domain;
           n=3; Cryptosporidium|Rep: WD-40 repeat protein, SMART
           LisH domain - Cryptosporidium parvum Iowa II
          Length = 595

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 20/76 (26%), Positives = 41/76 (53%)
 Frame = -3

Query: 497 YMNLTTFILLGKFQSKNALLQILGRITIKKYHSFNII*IVLPIKCLVASGHYNK*IKLAT 318
           + N+    L+ +F  ++ LL+    ++ +   S N I  V  I+ +++ GH+N+ I++  
Sbjct: 6   FSNVNVLKLILQFLLESGLLESYSTLSYESGVSLNWIESVDEIRTIISKGHWNELIEVLK 65

Query: 317 TVISKQDLQIITFIYI 270
            +    +LQII F +I
Sbjct: 66  YIKIPANLQIILFEHI 81


>UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=4;
           Eukaryota|Rep: DEAD box ATP-dependent RNA helicase -
           Aedes aegypti (Yellowfever mosquito)
          Length = 699

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 14/24 (58%), Positives = 21/24 (87%)
 Frame = +2

Query: 5   QAKDLVSVLQEANQIISPQLQSMA 76
           +A DL++VL+EANQ+I+P+L  MA
Sbjct: 480 KAGDLINVLREANQVINPKLAEMA 503


>UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila
           melanogaster|Rep: GH10652p - Drosophila melanogaster
           (Fruit fly)
          Length = 818

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 5   QAKDLVSVLQEANQIISPQLQSMA 76
           +A DL+ VL+EANQ I+P+L +MA
Sbjct: 515 KANDLIQVLREANQTINPKLMNMA 538


>UniRef50_P19109 Cluster: ATP-dependent RNA helicase p62; n=9;
           Eukaryota|Rep: ATP-dependent RNA helicase p62 -
           Drosophila melanogaster (Fruit fly)
          Length = 719

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMA 76
           +QAK LV VL+EANQ I+P L+++A
Sbjct: 640 KQAKALVDVLREANQEINPALENLA 664


>UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4;
           Fungi/Metazoa group|Rep: ATP-dependent RNA helicase DBP2
           - Gibberella zeae (Fusarium graminearum)
          Length = 555

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSM 73
           +QA+DLV+VLQEA Q I P+L  M
Sbjct: 491 KQARDLVNVLQEAKQQIDPRLVEM 514


>UniRef50_Q9SWV9 Cluster: Ethylene-responsive RNA helicase; n=5;
           Eukaryota|Rep: Ethylene-responsive RNA helicase -
           Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
          Length = 474

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSM 73
           R AKDLV++L+EA Q +SP+L  M
Sbjct: 424 RFAKDLVNILEEAGQKVSPELAKM 447


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,523,018
Number of Sequences: 1657284
Number of extensions: 8681962
Number of successful extensions: 15420
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15405
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)