Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120449.Seq
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    33   0.033
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.0  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMA 76
           +QA++LVS+L EA Q I P+L+ MA
Sbjct: 479 KQARELVSILSEAKQDIDPKLEEMA 503


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 191 PFGYSCQNCFRV*KSRHHLG-HLYRIC-SCSTRRHHHRNGRP 72
           PFG SC NC +   S    G     +C +C   + H ++ RP
Sbjct: 7   PFGQSCSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHARP 48


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 272 ITRIHPLEMPTKILFNSRQIVCNHCRPP-FGYSCQN 168
           +++ H  E+  K    S +I+CN CR P F +S +N
Sbjct: 757 LSKNHTGEITRKATEPSIRIICNFCRKPIFPFSNRN 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,257
Number of Sequences: 5004
Number of extensions: 38405
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)