Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120449.Seq
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  35   0.059
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   29   2.2  

>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMAD 79
           +QAK+LVSVLQEA Q ++P+L ++ D
Sbjct: 396 KQAKELVSVLQEAKQHVNPKLLNLQD 421


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 209  CNHCRPPFGYSCQNCFRV*KSRHH 138
            C  C P F Y C+NCFRV +S  H
Sbjct: 1199 CKTC-PDFDY-CENCFRVRRSHRH 1220


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 245 PTKILFNSRQIVCNHCRPPFGYSCQNCFRV*KSRHHLGHLYRICSCSTRRHHHRNGR 75
           P++ L   R  + NH RP   +   +C R   S HH    +  C C    +HHR  R
Sbjct: 228 PSRHLHCHRPRLSNHHRPSRHH---HCHRPRLSNHHRPSRHLHCHCPRLSNHHRLSR 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,873
Number of Sequences: 59808
Number of extensions: 281450
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)