Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120449.Seq
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-3|AAT92065.1|  529|Caenorhabditis elegans Dumpy : shorter...    29   2.0  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    29   2.0  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   4.5  

>U00036-3|AAT92065.1|  529|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform b protein.
          Length = 529

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 311 ISKQDLQIITFIYITRIHPLEMPTKILFNSRQIVCNHCRPPFGYSCQNCFRV 156
           +S  D++++  IY + + P ++P +    +    C+ CR P G++ Q C +V
Sbjct: 312 LSFNDIRLMNKIYCSAVCPSKLPCQRGGYTDPRRCDRCRCPDGFTGQYCEQV 363


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 311 ISKQDLQIITFIYITRIHPLEMPTKILFNSRQIVCNHCRPPFGYSCQNCFRV 156
           +S  D++++  IY + + P ++P +    +    C+ CR P G++ Q C +V
Sbjct: 312 LSFNDIRLMNKIYCSAVCPSKLPCQRGGYTDPRRCDRCRCPDGFTGQYCEQV 363


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 236 ILFNSRQIVCNHCRPPFGYSCQNCFRV*KSRHHLGHLYRIC-SCSTRRHHHRNGRPSTAV 60
           ++ N  + +CN+ +    Y C NC +  KS    G   ++C  C T +    N RP+  V
Sbjct: 488 VVCNCAEKLCNNLKFEPRYGCTNCKKNVKSSSDHGATEKLCLICQTYQKLTGNVRPARNV 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,768,949
Number of Sequences: 27780
Number of extensions: 220662
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)