Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120449.Seq
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 463 NFRVRMHYCKSWVESQ 416
           +FRV M   +SW+ES+
Sbjct: 31  DFRVDMFVRQSWIESR 46


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 92  HHRNGRPSTAVV 57
           HH N RP T++V
Sbjct: 121 HHDNARPHTSLV 132


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 104 TRRHHHRNGRPSTAVV 57
           T  HHH+NG   +++V
Sbjct: 170 TLGHHHQNGATPSSLV 185


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 92  HHRNGRPSTAVV 57
           HH N RP T++V
Sbjct: 243 HHDNARPHTSLV 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,736
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)