Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120449.Seq
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...    32   0.34 
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ...    31   0.45 
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ...    31   0.45 
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ...    31   0.45 
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    31   0.60 
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    28   4.2  

>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSM 73
           R AK+L ++LQEA Q +SP+L SM
Sbjct: 454 RFAKELTNILQEAGQKVSPELASM 477


>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMADR 82
           + A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 512 KHASDLIKILEGANQRVPPQIREMATR 538


>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMADR 82
           + A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 512 KHASDLIKILEGANQRVPPQIREMATR 538


>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 618

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMADR 82
           + A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 512 KHASDLIKILEGANQRVPPQIREMATR 538


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMADR 82
           + A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 583 KHASDLIKILEGANQKVPPQVREMATR 609


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 2   RQAKDLVSVLQEANQIISPQLQSMADR 82
           + A DL+ VL+ ANQ + PQ++ +A R
Sbjct: 789 KYAPDLIKVLEGANQQVPPQVRDIAMR 815


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,978
Number of Sequences: 28952
Number of extensions: 190943
Number of successful extensions: 339
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)