Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120448.Seq
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    31   0.17 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    31   0.17 
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    29   0.70 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.8  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    26   5.0  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   6.6  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   6.6  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   8.7  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   8.7  
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi...    25   8.7  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    25   8.7  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 663  IAVKLFPIKLAELPRFSCTPECSW-ICAIRAPLVRTAAPCWGRSSTQSCCRLR 508
            +   L+ +   ++ RFS     SW +   +AP V + + C   S ++SCC LR
Sbjct: 1758 LVANLWDVTDKDIDRFSLKMLESWGLFENKAPFVNSTSICTAVSESRSCCHLR 1810


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 464 PLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMS 285
           P+  +   L  L+S  A  R   T L +  A G +   +   PR++L V    EP+ + S
Sbjct: 384 PMQKLQQQLQRLVSS-AKERPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNS 442

Query: 284 SID--SGFS 264
           S++  SGFS
Sbjct: 443 SLNNFSGFS 451


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 423 KVCG--AARHGHITRCAGRVWRFNSIVVYGAQKNAVSAHF 310
           K+CG  A  HGH  R   R+W F   + Y  +K  ++  F
Sbjct: 39  KICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVF 78


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 283  DDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTR 408
            D I + G NK    S+ + T+ +    SPN+ +T+SN   T+
Sbjct: 891  DSIKRLGDNKFEDKSLRICTIPNSIFDSPNSHTTNSNSFFTK 932


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 286 DIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFK 441
           D +KE + K   +S+F    ++Y    PNA+    N T      ++D++E +
Sbjct: 64  DSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTT---EPSYDLQELR 112


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 362 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 270
           LTP    +P+ ++L+P L+   L  S+I SG
Sbjct: 673 LTPGQLVLPKNLVLLPILILAVLKSSAIRSG 703


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 309 VGALFDYVVYR*RFFGNILWLNLLSPCAMRKLATRALLSFTF 184
           VG L  Y +YR     N+ W  + S C +  ++   +   TF
Sbjct: 188 VGCLIGYFIYRGGNVMNLQWFLIASTCILYLISAGLMSKATF 229


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 630 ELPRFSCTPECSWICAIR 577
           ELPRF   P+C ++C ++
Sbjct: 212 ELPRFPDDPKCRYLCELQ 229


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 410 PRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTL 309
           P V++    V  AF  +TP  YTVP+  +++PTL
Sbjct: 384 PPVLMVPYRVKKAF-PITP-DYTVPKDAMVIPTL 415


>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
           Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 277 IAVFRQYTLAQFIIAVCDAQIGHPGVI 197
           + + R +  A F+I +C   +G PG+I
Sbjct: 23  VGIRRGFCTADFLINICLCALGIPGII 49


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 113 SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 253
           SLT+A  SL + S+SVE  +  +L+ +L+    ++AN R   G   L Q
Sbjct: 16  SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,876
Number of Sequences: 5004
Number of extensions: 62580
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)