Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120448.Seq
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)       33   0.33 
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               28   7.0  
SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)                     28   7.0  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
          Length = 340

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -3

Query: 492 VLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAH 313
           ++ S+  R +FE NK+   ++  K C     G+I    G     + +VV G+  NA+   
Sbjct: 203 LMRSYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFP 261

Query: 312 FVGALFDYVVY 280
            V AL DY+ Y
Sbjct: 262 SVKALADYIQY 272


>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 615 SCTPECSWICAIRAPLVRTAAPCWGRSSTQSCCRLRSQHAIV 490
           +C  E  W+      L+R     WGR    +C R   QH ++
Sbjct: 238 TCQGEKQWLQCPPYQLIRVNNAFWGRDDPTTCTRSGIQHGLI 279


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 256  YIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKE 435
            +I  K L+++ I K+  N  GT+ +   T  DYG  S N      N    R T    ++E
Sbjct: 1382 HIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHGNRIQERSTKRAALEE 1439


>SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)
          Length = 746

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 615 SCTPECSWICAIRAPLVRTAAPCWGRSSTQSCCRLRSQHAIVL 487
           SC P C+W+  + + L+      WG S  Q+ C +  Q  + L
Sbjct: 77  SCVPFCTWMAELESDLMNVFRFNWG-SMQQNDCAVFKQRVMSL 118


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 173 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 54
           S ++PP R  S+  W  PR RNL +   S R K  R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,649,040
Number of Sequences: 59808
Number of extensions: 477745
Number of successful extensions: 1301
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)