Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120448.Seq
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30260.1 68414.m03701 expressed protein                             35   0.066
At5g23890.1 68418.m02806 expressed protein weak similarity to SP...    29   4.3  
At5g25190.1 68418.m02986 ethylene-responsive element-binding pro...    28   7.6  
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat...    28   7.6  
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat...    28   7.6  
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat...    28   7.6  
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik...    27   10.0 

>At1g30260.1 68414.m03701 expressed protein
          Length = 97

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +1

Query: 286 DIVKEGSNKVGTNSIFLGTVYDYGVKSP-------NAASTSSNVTMTRGTANFDIKEFKS 444
           D +KE   +VGT+SIF  +     + SP       + +S S++ + T G   F + E + 
Sbjct: 31  DTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASASCTSGLNKFPVTENRG 90

Query: 445 MFIVFK 462
            F VFK
Sbjct: 91  SFPVFK 96


>At5g23890.1 68418.m02806 expressed protein weak similarity to
           SP|P12957 Caldesmon (CDM) {Gallus gallus}
          Length = 946

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 92  TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGD 238
           T    ++SLT    S+ QSS+ + SDE K  N + +N +  +  I   D
Sbjct: 120 TKKQEMHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168


>At5g25190.1 68418.m02986 ethylene-responsive element-binding
           protein, putative ethylene responsive element binding
           protein homolog, Stylosanthes hamata, EMBL:U91857
          Length = 181

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/72 (22%), Positives = 28/72 (38%)
 Frame = -3

Query: 597 SWICAIRAPLVRTAAPCWGRSSTQSCCRLRSQHAIVLYSFSGRYTFEYNKHGFKFLDIKV 418
           SW+  IR PL++T        + +   R   + A ++     R  F YN +       K+
Sbjct: 18  SWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSKL 77

Query: 417 CGAARHGHITRC 382
             A     + +C
Sbjct: 78  LSATLTAKLHKC 89


>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +1

Query: 289 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 444
           +V + S     N + L  V+DY    P+A  T    SS   + +G A    N+D K +K+
Sbjct: 75  VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134

Query: 445 MFIVFKGITPTKTVEDNGML 504
                + + P+  +   G+L
Sbjct: 135 NVFPPRRVNPSDVIILEGIL 154


>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +1

Query: 289 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 444
           +V + S     N + L  V+DY    P+A  T    SS   + +G A    N+D K +K+
Sbjct: 75  VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134

Query: 445 MFIVFKGITPTKTVEDNGML 504
                + + P+  +   G+L
Sbjct: 135 NVFPPRRVNPSDVIILEGIL 154


>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +1

Query: 289 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 444
           +V + S     N + L  V+DY    P+A  T    SS   + +G A    N+D K +K+
Sbjct: 75  VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134

Query: 445 MFIVFKGITPTKTVEDNGML 504
                + + P+  +   G+L
Sbjct: 135 NVFPPRRVNPSDVIILEGIL 154


>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
           protein GI:12006424 from [Arabidopsis thaliana];
           contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
           alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
           domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
           SAP domain; contains TIGRfam profile TIGR00578:
           ATP-dependent DNA helicase ii, 70 kDa subunit
          Length = 621

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 101 LNLNSLTEASPSLGQSSESVESDENKRLNVK 193
           LN + LTE  PS+GQ  E ++    KR+  K
Sbjct: 234 LNSDELTEFMPSVGQKLEDMKDQLKKRVLAK 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,670,299
Number of Sequences: 28952
Number of extensions: 324504
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)