Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120447.Seq
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 130 2e-31
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 130 2e-31
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 130 2e-31
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 32 0.12
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.35
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 29 0.81
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.4
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 27 3.3
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 26 7.6
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 130 bits (314), Expect = 2e-31
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = +2
Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 443 DAKRTRVKLPSGAKKVLPSSNR 508
D +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162
Score = 124 bits (299), Expect = 2e-29
Identities = 50/63 (79%), Positives = 59/63 (93%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
+ +VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 685 STV 693
+TV
Sbjct: 222 TTV 224
Score = 116 bits (278), Expect = 5e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 22 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 201
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 202 VHFRDPYKFKTRKELFIAPKPLH 270
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 130 bits (314), Expect = 2e-31
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = +2
Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 443 DAKRTRVKLPSGAKKVLPSSNR 508
D +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162
Score = 124 bits (299), Expect = 2e-29
Identities = 50/63 (79%), Positives = 59/63 (93%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
+ +VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 685 STV 693
+TV
Sbjct: 222 TTV 224
Score = 116 bits (278), Expect = 5e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 22 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 201
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 202 VHFRDPYKFKTRKELFIAPKPLH 270
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 130 bits (314), Expect = 2e-31
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = +2
Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 443 DAKRTRVKLPSGAKKVLPSSNR 508
D +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162
Score = 124 bits (299), Expect = 2e-29
Identities = 50/63 (79%), Positives = 59/63 (93%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
+ +VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 685 STV 693
+TV
Sbjct: 222 TTV 224
Score = 116 bits (278), Expect = 5e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 22 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 201
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 202 VHFRDPYKFKTRKELFIAPKPLH 270
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 607 PYVRGVAMNPVEHPHGGGNHQHIG 678
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 552 RFVNTSTSSNNT-DHALLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 412
RF+N +T+S++T LLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 827 FFLQIFNGLNNKFRSPSWYRSCSTNPSGPASSNKTNFATSRCSSLTVEALP 675
+++ L R P W +T P+ P S N +N A S + + A P
Sbjct: 35 YYMDKIGTLPEWLRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYIPANP 85
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 29.1 bits (62), Expect = 0.81
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -2
Query: 564 SFQNRFVNTSTSSNNTDHALLLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 397
SF+ + NT+T N + + LDGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 396 RRPLSPIFS 370
R+ PI S
Sbjct: 97 RQHNLPITS 105
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 541 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 633
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 566 PAFKIGLSIRPPPATIPTMLCCLMAEPSWLQTVALLLYA 450
P K+GL+ PP + M W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 202 VHFRDPYKFKTRKELFIAPKPLH 270
VH + +++KTR + PKP+H
Sbjct: 294 VHLKKNFEWKTRGTKYSLPKPVH 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,576
Number of Sequences: 5004
Number of extensions: 75140
Number of successful extensions: 236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -