Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120447.Seq
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 127 1e-29
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.28
09_03_0124 + 12526572-12526689,12528205-12528392 31 1.1
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623... 31 1.1
06_03_0011 + 15369132-15369379,15370283-15370556 29 3.5
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.5
06_03_0301 + 19302794-19303041,19303946-19304219 29 4.6
07_01_0758 - 5833016-5833234,5833324-5833839,5833940-5833960,583... 29 6.0
03_05_0391 - 23740603-23740665,23740805-23740927,23741009-237411... 29 6.0
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 6.0
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 28 8.0
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 28 8.0
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 127 bits (306), Expect = 1e-29
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
++M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 685 STVREE 702
STVR +
Sbjct: 223 STVRRD 228
Score = 126 bits (305), Expect = 2e-29
Identities = 53/83 (63%), Positives = 70/83 (84%)
Frame = +2
Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNP
Sbjct: 82 MYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNP 141
Query: 443 DAKRTRVKLPSGAKKVLPSSNRA 511
D +R+KLPSGAKK++PSS RA
Sbjct: 142 DNGTSRIKLPSGAKKIVPSSCRA 164
Score = 125 bits (302), Expect = 4e-29
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = +1
Query: 22 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 201
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 202 VHFRDPYKFKTRKELFIAPKPLH 270
V FR P+++K +KELF+A + ++
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMY 83
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.28
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 528 WRWTY*QTYFESWKGIPQVQG 590
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>09_03_0124 + 12526572-12526689,12528205-12528392
Length = 101
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +2
Query: 236 GRSSSLPRSLYTGQFVYCGKKAT----LEVGNVMPVGAMPEGTIVCNL-EEKMGDRGRLA 400
GRSS+ P +YT +F GKK + +G ++ G + G I K+G + A
Sbjct: 10 GRSSTPPPPMYTDEFALEGKKPVKNPFVPIGALVTAGVLTAGLISFRYGNSKLGQKLMRA 69
Query: 401 RASGNFATV 427
R ATV
Sbjct: 70 RVVAQGATV 78
>02_05_1225 + 35060642-35060815,35061254-35061802,35062284-35062348,
35062417-35062957,35063321-35064610
Length = 872
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Frame = +2
Query: 221 TSSRQGRSSSLPRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV--CNLEEKMGDRGR 394
+SS++ R+S LP+S Y + V+C + + V +P+ P + + +M R
Sbjct: 724 SSSKRRRASKLPKSYYDNKAVWC-QDPSERVAQFLPINQEPINNLPEWLTKDAEMAGVRR 782
Query: 395 LARASGNFATVIGHNPDAKRTRVK---LPSGAKKVLPSSNRAW 514
L GH+ + +K LP G+ K P W
Sbjct: 783 LDADLWPSMQAPGHSAADRLNEMKPHVLPDGSLKRAPKRKAEW 825
>06_03_0011 + 15369132-15369379,15370283-15370556
Length = 173
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 797 NKFRSPSWYRSCST-NPSGPASSNKTNFATSRCSSLTVE 684
N + +W S T NP+GP SS++ + R S+T E
Sbjct: 5 NSYHLATWANSAKTQNPTGPGSSHENMWLHVRLRSMTYE 43
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 406 LWKLRHCDWT 435
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>06_03_0301 + 19302794-19303041,19303946-19304219
Length = 173
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 797 NKFRSPSWYRSCST-NPSGPASSNKTNFATSRCSSLTVE 684
N + +W S T NP+GP SS++ + R S+T E
Sbjct: 5 NSYHLATWADSAKTRNPTGPGSSHENMWLHVRLKSITYE 43
>07_01_0758 -
5833016-5833234,5833324-5833839,5833940-5833960,
5834062-5834232,5834318-5834449,5834534-5834743
Length = 422
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 776 WYRSCSTNPSGPASSNKTNFATSRCSSLTVEALPI 672
W SC TN P + T CS+L VE L +
Sbjct: 161 WQNSCKTNAKLPCTEAPTALTFYSCSNLKVENLKL 195
>03_05_0391 -
23740603-23740665,23740805-23740927,23741009-23741148,
23741209-23741264,23742005-23742262,23743290-23743627
Length = 325
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 797 NKFRSPSWYRSCST-NPSGPASSNKTNFATSRCSSLTVE 684
N + +W S T NP+GP SS++ + R S+T E
Sbjct: 35 NSYHLATWADSAKTRNPTGPGSSHENMWLHVRLRSMTYE 73
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 6.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 528 WRWTY*QTYFESWKGIPQVQG 590
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 669 TYR*GFHCQRGTSAGRKVGLI 731
T+R GFH +R +AG KVG++
Sbjct: 402 TFRLGFHVRRLVAAGHKVGVV 422
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -3
Query: 437 CVQSQWRSFQRHVPDDLYHPFSLQDCXQWY 348
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,622,735
Number of Sequences: 37544
Number of extensions: 547342
Number of successful extensions: 1534
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -