Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120447.Seq
(835 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 4e-34
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 142 4e-34
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 38 0.010
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 30 2.0
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 29 3.5
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 142 bits (343), Expect = 4e-34
Identities = 62/83 (74%), Positives = 73/83 (87%)
Frame = +2
Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN
Sbjct: 82 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 141
Query: 443 DAKRTRVKLPSGAKKVLPSSNRA 511
+ KRTRVKLPSG KKV+PSSNRA
Sbjct: 142 EKKRTRVKLPSGIKKVIPSSNRA 164
Score = 140 bits (339), Expect = 1e-33
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +1
Query: 22 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 201
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 202 VHFRDPYKFKTRKELFIAPKPLH 270
V FRDPY++K RKELF+A + ++
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMY 83
Score = 132 bits (319), Expect = 3e-31
Identities = 56/66 (84%), Positives = 61/66 (92%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
+++VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 163 RALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHP 222
Query: 685 STVREE 702
STVR +
Sbjct: 223 STVRRD 228
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 142 bits (343), Expect = 4e-34
Identities = 62/83 (74%), Positives = 73/83 (87%)
Frame = +2
Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN
Sbjct: 40 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 99
Query: 443 DAKRTRVKLPSGAKKVLPSSNRA 511
+ KRTRVKLPSG KKV+PSSNRA
Sbjct: 100 EKKRTRVKLPSGIKKVIPSSNRA 122
Score = 70.5 bits (165), Expect = 2e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 148 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPKPLH 270
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A + ++
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 37.9 bits (84), Expect = 0.010
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2
Query: 299 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 478
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 479 AKKVLPS 499
+K + S
Sbjct: 168 VEKEVSS 174
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 594 FDLVLVVCPSSFQNRFVNT--STSSNNTDHALLLDGRTFLAPDGSFT 460
F L V PSS QN F + + ++ T L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 29.9 bits (64), Expect = 2.7
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 375 FSSRLXTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*RLRG----NEEL---LPCLELVW 217
F+S L T +P+ P G+TF T +V F +NW + G ++EL L LE +W
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 216 IAEVYNSQRCTS--TRVMD 166
I + + S TR+MD
Sbjct: 1122 IRGRWTNLTDPSLKTRLMD 1140
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 341 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 517
P G I+ + +GD+ R +GN T A + +PS L + +RAWS
Sbjct: 218 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 275
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 341 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 517
P G I+ + +GD+ R +GN T A + +PS L + +RAWS
Sbjct: 332 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 389
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,676,042
Number of Sequences: 59808
Number of extensions: 603024
Number of successful extensions: 1581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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