Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120447.Seq
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.65 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   2.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.5  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 428 IGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLE 532
           IG+  + K+TR  LP+G +KVL  + +   VL+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 785 SPSWYRSCSTNPSGPASSNKTNFATSRCSS 696
           S S   S +  P  PASS+ ++  TS CSS
Sbjct: 578 SDSGIESGTEKPDKPASSSASSAPTSVCSS 607


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 699 LSDSGSLTYMLMVTTTVRMLYRVH 628
           LS  GS+TY +  TTT+  +  +H
Sbjct: 143 LSGDGSVTYGMRFTTTLACMMDLH 166


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 379 HFLFKIAXNGTLRHSSNRHHI 317
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 379 HFLFKIAXNGTLRHSSNRHHI 317
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 379 HFLFKIAXNGTLRHSSNRHHI 317
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 379 HFLFKIAXNGTLRHSSNRHHI 317
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,379
Number of Sequences: 438
Number of extensions: 5717
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)