Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120447.Seq
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   128   3e-30
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             128   3e-30
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   127   1e-29
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    46   4e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    46   4e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    46   4e-05
At3g51550.1 68416.m05645 protein kinase family protein contains ...    29   5.0  
At1g80170.1 68414.m09383 polygalacturonase, putative / pectinase...    29   5.0  
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ...    28   6.6  
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ...    28   6.6  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    28   6.6  

>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  128 bits (310), Expect = 3e-30
 Identities = 54/83 (65%), Positives = 72/83 (86%)
 Frame = +2

Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
           +YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E  +GDRG LARASG++A VI HNP
Sbjct: 83  MYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNP 142

Query: 443 DAKRTRVKLPSGAKKVLPSSNRA 511
           ++  TRVKLPSG+KK+LPS+ RA
Sbjct: 143 ESNTTRVKLPSGSKKILPSACRA 165



 Score =  126 bits (305), Expect = 1e-29
 Identities = 53/66 (80%), Positives = 58/66 (87%)
 Frame = +1

Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
           ++M+G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 164 RAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHA 223

Query: 685 STVREE 702
           STVR +
Sbjct: 224 STVRRD 229



 Score =  118 bits (285), Expect = 4e-27
 Identities = 56/84 (66%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
 Frame = +1

Query: 22  MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 198
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 199 VVHFRDPYKFKTRKELFIAPKPLH 270
            V FR P+++  +KELF+A + ++
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMY 84


>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  128 bits (310), Expect = 3e-30
 Identities = 55/83 (66%), Positives = 71/83 (85%)
 Frame = +2

Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
           +YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E  +GDRG LARASG++A VI HNP
Sbjct: 82  MYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNP 141

Query: 443 DAKRTRVKLPSGAKKVLPSSNRA 511
           D+  TR+KLPSG+KK++PS  RA
Sbjct: 142 DSDTTRIKLPSGSKKIVPSGCRA 164



 Score =  126 bits (304), Expect = 2e-29
 Identities = 58/83 (69%), Positives = 69/83 (83%)
 Frame = +1

Query: 22  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 201
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 202 VHFRDPYKFKTRKELFIAPKPLH 270
           V FR P++FK +KELF+A + ++
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMY 83



 Score =  123 bits (296), Expect = 2e-28
 Identities = 52/66 (78%), Positives = 59/66 (89%)
 Frame = +1

Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
           ++M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHA 222

Query: 685 STVREE 702
           STVR +
Sbjct: 223 STVRRD 228


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  127 bits (306), Expect = 1e-29
 Identities = 53/66 (80%), Positives = 60/66 (90%)
 Frame = +1

Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
           ++M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222

Query: 685 STVREE 702
           STVR +
Sbjct: 223 STVRRD 228



 Score =  126 bits (304), Expect = 2e-29
 Identities = 58/83 (69%), Positives = 69/83 (83%)
 Frame = +1

Query: 22  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 201
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 202 VHFRDPYKFKTRKELFIAPKPLH 270
           V FR P++FK +KELF+A + ++
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMY 83



 Score =  124 bits (298), Expect = 1e-28
 Identities = 52/83 (62%), Positives = 69/83 (83%)
 Frame = +2

Query: 263 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 442
           +YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E  +GDRG  ARASG++A VI HNP
Sbjct: 82  MYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNP 141

Query: 443 DAKRTRVKLPSGAKKVLPSSNRA 511
           D   +R+KLPSG+KK++PS  RA
Sbjct: 142 DNDTSRIKLPSGSKKIVPSGCRA 164


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +1

Query: 580 KYKVKRNCWPYVRGVAM-NPVEHPHGG 657
           K  +KRN W  VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/67 (35%), Positives = 38/67 (56%)
 Frame = +2

Query: 311 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 490
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 491 LPSSNRA 511
           + +  RA
Sbjct: 118 INAKCRA 124



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 23/54 (42%), Positives = 33/54 (61%)
 Frame = +1

Query: 499 KQQSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 660
           K ++ +G V+      K + KAG++  ++   R   P VRGVAMNP +HPHGGG
Sbjct: 121 KCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/67 (35%), Positives = 38/67 (56%)
 Frame = +2

Query: 311 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 490
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 491 LPSSNRA 511
           + +  RA
Sbjct: 118 INAKCRA 124



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 23/54 (42%), Positives = 33/54 (61%)
 Frame = +1

Query: 499 KQQSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 660
           K ++ +G V+      K + KAG++  ++   R   P VRGVAMNP +HPHGGG
Sbjct: 121 KCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169


>At3g51550.1 68416.m05645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 895

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 739 RAAIRPTLRPADVPL*QWKPYLYVDG 662
           R A+ PTL    V L +W PY Y  G
Sbjct: 735 RPALNPTLAKEQVSLAEWAPYCYKKG 760


>At1g80170.1 68414.m09383 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase GI:7381227 from
           [Lycopersicon esculentum]; contains Pfam profile
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 444

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 776 WYRSCSTNPSGPASSNKTNFATSRCSSLTVEALPI 672
           W RSC  N S P     T     +C ++ VE L +
Sbjct: 161 WERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNV 195


>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
           contains Pfam PF04791: LMBR1-like conserved region
          Length = 733

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 528 WRWTY*QTYFESWKGIPQVQG 590
           W W+Y  T+  +W  +P +QG
Sbjct: 74  WSWSYWSTFLLTWAVVPLIQG 94


>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 676

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 391 TSITHFLFKIAXNGTLRHSSNRHHISNFKSCFLSTINKLACVEAS 257
           +++T+    I  NG    SSN++ +  F+    ST+N LA VEA+
Sbjct: 137 STVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLN-LAAVEAA 180


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 421 GEVSRGTCQTTSITHFLFKIAXNGTLRHSSNRHHISNF 308
           G+V  GTC           +A +G +R   N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,435,433
Number of Sequences: 28952
Number of extensions: 413981
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)