Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120446.Seq
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    27   2.5  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   3.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.9  

>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 54  WRSCVAVLVETCVILSFVNSRLKP 125
           WR+   VL++   +L+FVN RLKP
Sbjct: 333 WRAMTVVLLDK--LLAFVNERLKP 354


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 51  AWRSCVAVLVETCVILSFVNSR 116
           +WR C +V  ET  ILS V +R
Sbjct: 277 SWRECWSVFYETLKILSLVETR 298


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 337  IENSNGHDWR**ERSRLSPLDRRPVI 260
            IE S+G+DW    RS LSP D  P++
Sbjct: 1995 IERSSGNDW----RSSLSPGDSLPIL 2016


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -1

Query: 500 LQLMSSCNKPTIWFKVRPRE 441
           L+L SS N+P ++++++P++
Sbjct: 707 LELKSSFNRPNLFYEIKPKK 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,953
Number of Sequences: 5004
Number of extensions: 48166
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)