Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120446.Seq
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_16030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 9   YKSEPSVPFAPYFCAWRSCVAVLVETCVILSFVNS 113
           +K     PF+PYF     C  VL+  C  +SF++S
Sbjct: 58  FKRNSHFPFSPYFINITVCSFVLLLNCNPMSFISS 92


>SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 111 C*QNLKLHKSRQEPPRTNATHKNKGRRAPKA 19
           C +N  +HKS   PP T  T KNKG  +  A
Sbjct: 59  CIENATMHKST--PPATTKTSKNKGASSQTA 87


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -3

Query: 498 AVNEFLQ*ADDMVQSTPAGTMPGVITSRRCLATPAYRTIATLRHGR*FAQPTPRSR 331
           A N F    D++ +    G  PG+    R  + PA+R       GR    P P+ R
Sbjct: 406 AYNPFDDEEDEVEEPVKKGVAPGMGQGERKTSDPAFRRNRLTASGRRVKLPAPKPR 461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,043,686
Number of Sequences: 59808
Number of extensions: 355708
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)