Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120445.Seq
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    27   2.3  
SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c...    27   3.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   7.0  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   7.0  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.3  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   9.3  

>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 38  FKNNRTKTNEILELIHTDLNGPHSTTGYGGEKY 136
           F N     N       ++LNGPH+T G  GE +
Sbjct: 191 FPNVNESANMYRASSESNLNGPHATAGENGEDH 223


>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 517 ENKTPYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDK 642
           EN    E+ F +K  VE  +IY S + +R    L+ +K+DD+
Sbjct: 12  ENAAEIEMQFAVKA-VEQAQIYWSLLEMRKGSELKLTKYDDE 52


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 637  DKAQLGVLVGYTENGYRVY*IIE 705
            D A+LG LVG  + G RVY +++
Sbjct: 1195 DPAELGELVGVPKEGRRVYNMVQ 1217


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 721 CLALIILLFNKLYNHSQCTLPTLLVGLYRPIYFSLKLLEPLHRLYFHK--SLNVLHLV 554
           C  L ++LF  LYN+ +       V     I FS   +E  H +++    SL++L L+
Sbjct: 414 CSILSLILFRNLYNYKELLAFAPFVVQNIIIVFSSSFIEEEHVIWYFAAVSLSLLQLL 471


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 96  MVHIAQLDMVEKNIFLTFIDDYSKCTR 176
           ++H +Q D++EK  F   + DY K T+
Sbjct: 250 LLHKSQWDLIEKLSFPLRLSDYKKITK 276


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 583 GSKVYVRVPEVLRKSKWDDKAQL 651
           GS +Y+  PE+LR  K+D KA L
Sbjct: 211 GSPLYM-APEILRYEKYDAKADL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,477
Number of Sequences: 5004
Number of extensions: 54001
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)