Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120445.Seq
         (784 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY882862-1|AAX68677.1|  601|Homo sapiens establishment of cohesi...    32   2.0  
AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protei...    31   4.7  
AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protei...    31   4.7  
AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein.    31   4.7  
AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein.    31   4.7  
AB011104-1|BAA25458.1| 1637|Homo sapiens KIAA0532 protein protein.     31   4.7  

>AY882862-1|AAX68677.1|  601|Homo sapiens establishment of cohesion
           1 homolog 2 protein.
          Length = 601

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 484 IFKKSNNCYTVENKT--PYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDKAQLG 654
           I +K NNC++ EN +  P  +   IKP V  L+  G+  +VR    LRKS  +++  LG
Sbjct: 175 IVEKENNCHSAENNSNAPRVLSQKIKPQVT-LQ-GGAAFFVRKKSSLRKSSLENEPSLG 231


>AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protein
            splice variant 1 protein.
          Length = 3997

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 511  TVENKTPYEIFFGIKPNVEHLKIYGSKVYVRVPE 612
            T+ N TPY+IF+  KP +     +  K Y RVP+
Sbjct: 3085 TIINNTPYQIFY--KPQLSVCNPHSGKEYFRVPD 3116


>AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protein
            protein.
          Length = 4022

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 511  TVENKTPYEIFFGIKPNVEHLKIYGSKVYVRVPE 612
            T+ N TPY+IF+  KP +     +  K Y RVP+
Sbjct: 3110 TIINNTPYQIFY--KPQLSVCNPHSGKEYFRVPD 3141


>AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein.
          Length = 3997

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 511  TVENKTPYEIFFGIKPNVEHLKIYGSKVYVRVPE 612
            T+ N TPY+IF+  KP +     +  K Y RVP+
Sbjct: 3085 TIINNTPYQIFY--KPQLSVCNPHSGKEYFRVPD 3116


>AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein.
          Length = 4022

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 511  TVENKTPYEIFFGIKPNVEHLKIYGSKVYVRVPE 612
            T+ N TPY+IF+  KP +     +  K Y RVP+
Sbjct: 3110 TIINNTPYQIFY--KPQLSVCNPHSGKEYFRVPD 3141


>AB011104-1|BAA25458.1| 1637|Homo sapiens KIAA0532 protein protein.
          Length = 1637

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 511 TVENKTPYEIFFGIKPNVEHLKIYGSKVYVRVPE 612
           T+ N TPY+IF+  KP +     +  K Y RVP+
Sbjct: 725 TIINNTPYQIFY--KPQLSVCNPHSGKEYFRVPD 756


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,483,151
Number of Sequences: 237096
Number of extensions: 1686095
Number of successful extensions: 6136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6135
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)