Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120445.Seq
(784 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X07656-2|CAA30503.1| 982|Drosophila melanogaster protein ( Dros... 89 6e-18
X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical p... 72 1e-12
X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical p... 72 1e-12
X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Dros... 72 1e-12
X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprot... 72 1e-12
BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p pro... 72 1e-12
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 41 0.002
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 40 0.005
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 40 0.005
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 40 0.005
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 40 0.005
AY119276-1|AAM51136.1| 714|Drosophila melanogaster SD26211p pro... 40 0.005
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 40 0.005
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 38 0.012
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 37 0.027
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 37 0.036
X15707-1|CAA33737.1| 267|Drosophila melanogaster protein ( Dros... 35 0.11
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 34 0.25
AY058502-1|AAL13731.1| 280|Drosophila melanogaster LD21171p pro... 34 0.25
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 33 0.58
AF132185-1|AAD34773.1| 524|Drosophila melanogaster unknown prot... 30 4.1
AE014134-1350|AAF52565.1| 524|Drosophila melanogaster CG7115-PB... 30 4.1
AE014134-1349|AAF52564.1| 524|Drosophila melanogaster CG7115-PA... 30 4.1
AJ279888-1|CAB69645.1| 120|Drosophila melanogaster integrase pr... 29 5.4
>X07656-2|CAA30503.1| 982|Drosophila melanogaster protein (
Drosophila melanogasterretrotransposon 1731 sequence. ).
Length = 982
Score = 89.0 bits (211), Expect = 6e-18
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Frame = +2
Query: 8 CIESKMTNVPF-KNNRTKTNEILELIHTDLNGPHSTTGYGGEKYFFDLY**L**MYKNFL 184
C+ +K+ PF K R++ E+L++IH+DL GP ST G KYF + F+
Sbjct: 177 CMLAKIHVQPFPKTTRSRAEELLDMIHSDLCGPFSTPSLAGSKYFLTFIDDK--SRRIFV 234
Query: 185 Y*K*SRNCKLFYRIC*FSRK*I**RVKKLQC---DNGKEYLNRDIYDFIGHKGIELLPCP 355
Y ++ ++F + F + +K++C DNG E++N D++ GI
Sbjct: 235 YFLRKKD-EVFTKFVEFKKLVERQTGRKIKCIRSDNGGEFVNNVFDDYLKAHGIARQLTI 293
Query: 356 PYVHELNGVAERYNRSAMDIGRCLMREAKIHRRYWPEVIKTAAYLKNRT 502
P+ + NGVAER NR+ +++ RC++ ++++ W E I TA YL+NR+
Sbjct: 294 PHTPQQNGVAERANRTLVEMARCMLLQSELGEALWAEAINTAVYLRNRS 342
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/76 (26%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Frame = +1
Query: 475 NSSIFKKSNNCY-TVENKTPYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDKAQL 651
N++++ ++ + +++KTP E + G P V HL+++G+ + V + + + K K++ K +
Sbjct: 333 NTAVYLRNRSTSRALQSKTPMEEWTGKIPAVSHLRVFGA-IAVALDKGVHKGKFESKGKE 391
Query: 652 GVLVGYT--ENGYRVY 693
++GY+ GYR++
Sbjct: 392 YRMIGYSIAAKGYRLF 407
Score = 37.5 bits (83), Expect = 0.020
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +3
Query: 138 FLTFIDDYSKCTRIFCIKSKAETASCFIEFVNLVENKFNKELR 266
FLTFIDD S+ ++ ++ K E + F+EF LVE + ++++
Sbjct: 221 FLTFIDDKSRRIFVYFLRKKDEVFTKFVEFKKLVERQTGRKIK 263
>X04456-2|CAD27357.1| 1017|Drosophila melanogaster hypothetical
protein protein.
Length = 1017
Score = 71.7 bits (168), Expect = 1e-12
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 CIESKMTNVPFKNNRTKTN--EILELIHTDLNGPHSTTGYGGEKYFFDLY**L**MYKNF 181
C+ K +PFK + KT+ L ++H+D+ GP + + YF +
Sbjct: 66 CLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTY 125
Query: 182 LY*K*SRNCKLFYRIC*FSRK*I**RVKKLQCDNGKEYLNRDIYDFIGHKGIELLPCPPY 361
L S +F S +V L DNG+EYL+ ++ F KGI P+
Sbjct: 126 LIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPH 185
Query: 362 VHELNGVAERYNRSAMDIGRCLMREAKIHRRYWPEVIKTAAYLKNR 499
+LNGV+ER R+ + R ++ AK+ + +W E + TA YL NR
Sbjct: 186 TPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINR 231
Score = 56.4 bits (130), Expect = 4e-08
Identities = 22/58 (37%), Positives = 41/58 (70%)
Frame = +1
Query: 520 NKTPYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDKAQLGVLVGYTENGYRVY 693
+KTPYE++ KP ++HL+++G+ VYV + ++ K+DDK+ + VGY NG++++
Sbjct: 241 SKTPYEMWHNKKPYLKHLRVFGATVYVHIKN--KQGKFDDKSFKSIFVGYEPNGFKLW 296
Score = 33.1 bits (72), Expect = 0.44
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 105 IAQLDMVEKNIFLTFIDDYSKCTRIFCIKSKAETASCFIEFVNLVENKFN 254
I + + +KN F+ F+D ++ + IK K++ S F +FV E FN
Sbjct: 100 ITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFN 149
>X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical
protein protein.
Length = 1409
Score = 71.7 bits (168), Expect = 1e-12
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 CIESKMTNVPFKNNRTKTN--EILELIHTDLNGPHSTTGYGGEKYFFDLY**L**MYKNF 181
C+ K +PFK + KT+ L ++H+D+ GP + + YF +
Sbjct: 458 CLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTY 517
Query: 182 LY*K*SRNCKLFYRIC*FSRK*I**RVKKLQCDNGKEYLNRDIYDFIGHKGIELLPCPPY 361
L S +F S +V L DNG+EYL+ ++ F KGI P+
Sbjct: 518 LIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPH 577
Query: 362 VHELNGVAERYNRSAMDIGRCLMREAKIHRRYWPEVIKTAAYLKNR 499
+LNGV+ER R+ + R ++ AK+ + +W E + TA YL NR
Sbjct: 578 TPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINR 623
Score = 56.4 bits (130), Expect = 4e-08
Identities = 22/58 (37%), Positives = 41/58 (70%)
Frame = +1
Query: 520 NKTPYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDKAQLGVLVGYTENGYRVY 693
+KTPYE++ KP ++HL+++G+ VYV + ++ K+DDK+ + VGY NG++++
Sbjct: 633 SKTPYEMWHNKKPYLKHLRVFGATVYVHIKN--KQGKFDDKSFKSIFVGYEPNGFKLW 688
Score = 33.1 bits (72), Expect = 0.44
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 105 IAQLDMVEKNIFLTFIDDYSKCTRIFCIKSKAETASCFIEFVNLVENKFN 254
I + + +KN F+ F+D ++ + IK K++ S F +FV E FN
Sbjct: 492 ITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFN 541
>X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein (
Drosophila melanogastervirus like particle RNA (VLP
H-RNA). ).
Length = 1288
Score = 71.7 bits (168), Expect = 1e-12
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 CIESKMTNVPFKNNRTKTN--EILELIHTDLNGPHSTTGYGGEKYFFDLY**L**MYKNF 181
C+ K +PFK + KT+ L ++H+D+ GP + + YF +
Sbjct: 458 CLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTY 517
Query: 182 LY*K*SRNCKLFYRIC*FSRK*I**RVKKLQCDNGKEYLNRDIYDFIGHKGIELLPCPPY 361
L S +F S +V L DNG+EYL+ ++ F KGI P+
Sbjct: 518 LIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPH 577
Query: 362 VHELNGVAERYNRSAMDIGRCLMREAKIHRRYWPEVIKTAAYLKNR 499
+LNGV+ER R+ + R ++ AK+ + +W E + TA YL NR
Sbjct: 578 TPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINR 623
Score = 56.4 bits (130), Expect = 4e-08
Identities = 22/58 (37%), Positives = 41/58 (70%)
Frame = +1
Query: 520 NKTPYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDKAQLGVLVGYTENGYRVY 693
+KTPYE++ KP ++HL+++G+ VYV + ++ K+DDK+ + VGY NG++++
Sbjct: 633 SKTPYEMWHNKKPYLKHLRVFGATVYVHIKN--KQGKFDDKSFKSIFVGYEPNGFKLW 688
Score = 33.1 bits (72), Expect = 0.44
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 105 IAQLDMVEKNIFLTFIDDYSKCTRIFCIKSKAETASCFIEFVNLVENKFN 254
I + + +KN F+ F+D ++ + IK K++ S F +FV E FN
Sbjct: 492 ITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFN 541
>X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprotein
protein.
Length = 1409
Score = 71.7 bits (168), Expect = 1e-12
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 CIESKMTNVPFKNNRTKTN--EILELIHTDLNGPHSTTGYGGEKYFFDLY**L**MYKNF 181
C+ K +PFK + KT+ L ++H+D+ GP + + YF +
Sbjct: 458 CLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTY 517
Query: 182 LY*K*SRNCKLFYRIC*FSRK*I**RVKKLQCDNGKEYLNRDIYDFIGHKGIELLPCPPY 361
L S +F S +V L DNG+EYL+ ++ F KGI P+
Sbjct: 518 LIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPH 577
Query: 362 VHELNGVAERYNRSAMDIGRCLMREAKIHRRYWPEVIKTAAYLKNR 499
+LNGV+ER R+ + R ++ AK+ + +W E + TA YL NR
Sbjct: 578 TPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINR 623
Score = 56.4 bits (130), Expect = 4e-08
Identities = 22/58 (37%), Positives = 41/58 (70%)
Frame = +1
Query: 520 NKTPYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDKAQLGVLVGYTENGYRVY 693
+KTPYE++ KP ++HL+++G+ VYV + ++ K+DDK+ + VGY NG++++
Sbjct: 633 SKTPYEMWHNKKPYLKHLRVFGATVYVHIKN--KQGKFDDKSFKSIFVGYEPNGFKLW 688
Score = 33.1 bits (72), Expect = 0.44
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 105 IAQLDMVEKNIFLTFIDDYSKCTRIFCIKSKAETASCFIEFVNLVENKFN 254
I + + +KN F+ F+D ++ + IK K++ S F +FV E FN
Sbjct: 492 ITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFN 541
>BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p
protein.
Length = 1409
Score = 71.7 bits (168), Expect = 1e-12
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 CIESKMTNVPFKNNRTKTN--EILELIHTDLNGPHSTTGYGGEKYFFDLY**L**MYKNF 181
C+ K +PFK + KT+ L ++H+D+ GP + + YF +
Sbjct: 458 CLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTY 517
Query: 182 LY*K*SRNCKLFYRIC*FSRK*I**RVKKLQCDNGKEYLNRDIYDFIGHKGIELLPCPPY 361
L S +F S +V L DNG+EYL+ ++ F KGI P+
Sbjct: 518 LIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPH 577
Query: 362 VHELNGVAERYNRSAMDIGRCLMREAKIHRRYWPEVIKTAAYLKNR 499
+LNGV+ER R+ + R ++ AK+ + +W E + TA YL NR
Sbjct: 578 TPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINR 623
Score = 56.4 bits (130), Expect = 4e-08
Identities = 22/58 (37%), Positives = 41/58 (70%)
Frame = +1
Query: 520 NKTPYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDKAQLGVLVGYTENGYRVY 693
+KTPYE++ KP ++HL+++G+ VYV + ++ K+DDK+ + VGY NG++++
Sbjct: 633 SKTPYEMWHNKKPYLKHLRVFGATVYVHIKN--KQGKFDDKSFKSIFVGYEPNGFKLW 688
Score = 33.1 bits (72), Expect = 0.44
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 105 IAQLDMVEKNIFLTFIDDYSKCTRIFCIKSKAETASCFIEFVNLVENKFN 254
I + + +KN F+ F+D ++ + IK K++ S F +FV E FN
Sbjct: 492 ITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFN 541
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 40.7 bits (91), Expect = 0.002
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 263 KKLQCDNGKEYLNRDI-YDFIGHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMREA 439
K + DN K + I + GIEL PPY +NG ER++ + +I RCL +
Sbjct: 874 KLIVMDNEKSLNSASIKFMLTDQLGIELYKAPPYKSTVNGQIERFHSTLSEIMRCLKGDG 933
Query: 440 KIHRRYWPEVIKTAAYLKNRTI 505
HR + E++ A Y N T+
Sbjct: 934 -THRGF-EELLDRAIYEYNYTV 953
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 39.5 bits (88), Expect = 0.005
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 VKKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
+K + CDN + + + + + GI+++ PP NG ER++ + +I RCL +
Sbjct: 835 IKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLD 894
Query: 437 AKIHRRYWPEVIKTAAYLKNRTI 505
K + E+I A N+T+
Sbjct: 895 KKTNDTV--ELILRATIEYNKTV 915
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 39.5 bits (88), Expect = 0.005
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 VKKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
+K + CDN + + + + + GI+++ PP NG ER++ + +I RCL +
Sbjct: 870 IKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLD 929
Query: 437 AKIHRRYWPEVIKTAAYLKNRTI 505
K + E+I A N+T+
Sbjct: 930 KKTNDTV--ELILRATIEYNKTV 950
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 39.5 bits (88), Expect = 0.005
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 VKKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
+K + CDN + + + + + GI+++ PP NG ER++ + +I RCL +
Sbjct: 835 IKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLD 894
Query: 437 AKIHRRYWPEVIKTAAYLKNRTI 505
K + E+I A N+T+
Sbjct: 895 KKTNDTV--ELILRATIEYNKTV 915
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 39.5 bits (88), Expect = 0.005
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 VKKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
+K + CDN + + + + + GI+++ PP NG ER++ + +I RCL +
Sbjct: 835 IKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLD 894
Query: 437 AKIHRRYWPEVIKTAAYLKNRTI 505
K + E+I A N+T+
Sbjct: 895 KKTNDTV--ELILRATIEYNKTV 915
>AY119276-1|AAM51136.1| 714|Drosophila melanogaster SD26211p
protein.
Length = 714
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/76 (26%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Frame = +1
Query: 475 NSSIFKKSNNCY-TVENKTPYEIFFGIKPNVEHLKIYGSKVYVRVPEVLRKSKWDDKAQL 651
N++++ ++ + +++KTP E + G P V HL+++G+ + V + + + K K++ K +
Sbjct: 21 NTAVYLRNRSTSRALQSKTPMEEWTGKIPAVSHLRVFGA-IAVALDKGVHKGKFESKGKE 79
Query: 652 GVLVGYT--ENGYRVY 693
++GY+ GYR++
Sbjct: 80 YRMIGYSIAAKGYRLF 95
Score = 33.1 bits (72), Expect = 0.44
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 413 IGRCLMREAKIHRRYWPEVIKTAAYLKNRT 502
+ RC++ ++++ W E I TA YL+NR+
Sbjct: 1 MARCMLLQSELGEALWAEAINTAVYLRNRS 30
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 39.5 bits (88), Expect = 0.005
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 VKKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
+K + CDN + + + + + GI+++ PP NG ER++ + +I RCL +
Sbjct: 1288 IKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLD 1347
Query: 437 AKIHRRYWPEVIKTAAYLKNRTI 505
K + E+I A N+T+
Sbjct: 1348 KKTNDTV--ELILRATIEYNKTV 1368
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 38.3 bits (85), Expect = 0.012
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 VKKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
+K + CDN + + + + + GI+++ PP NG ER++ + +I RCL +
Sbjct: 840 IKTVYCDNEPAFNSETVTSMLKNTFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLD 899
Query: 437 AKIHRRYWPEVIKTAAYLKNRTI 505
K E+I A N+T+
Sbjct: 900 KKTSDTV--ELILRATIEYNKTV 920
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 37.1 bits (82), Expect = 0.027
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 VKKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
+K + CDN + + + + + GI+++ PP NG ER++ + +I CL +
Sbjct: 870 IKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIASCLKLD 929
Query: 437 AKIHRRYWPEVIKTAAYLKNRTI 505
K + E+I A N+T+
Sbjct: 930 KKTNDTV--ELILRATIEYNKTV 950
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed DNA
polymerase protein.
Length = 1013
Score = 36.7 bits (81), Expect = 0.036
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 RVKKLQCDNGKEYLNRDIYDFI-GHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMR 433
+ K + CDN ++ I + H G+ + PP NG ER++ + +++ RCL
Sbjct: 837 KAKTIYCDNEPSLKSQTIVAMLENHFGVSISNAPPLHSVSNGQVERFHSTLIELARCLKI 896
Query: 434 EAKIHRRYWPEVIKTAAY 487
+ I ++ TA Y
Sbjct: 897 DKGISDTVELVLLATARY 914
>X15707-1|CAA33737.1| 267|Drosophila melanogaster protein (
Drosophila melanogasterDNA sequence (isolate CBS) for
18S rRNA (3'end), 5.8SrRNA and 28S rRNA (5'end). ).
Length = 267
Score = 35.1 bits (77), Expect = 0.11
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 RVKKLQCDNGKEYLNRDIYDFI-GHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMR 433
R + + CDN + I + H G+ + PP NG ER++ + +++ RCL
Sbjct: 115 RARVVYCDNEPSLNSHTISTMLDNHFGVSIANAPPLHSVSNGQVERFHSTLLELARCLKI 174
Query: 434 EAKIHRRYWPEVIKTAAY 487
+ I ++ TA Y
Sbjct: 175 DKGITDTVEIILLATAKY 192
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 33.9 bits (74), Expect = 0.25
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 263 KKLQCDNGKEYLNRDIYDFIGHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
K L DN + L + +++ I+L P E+NG ER++ + ++I RCL E
Sbjct: 816 KVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYRCLKDE 873
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +3
Query: 96 MVHIAQLDMVEKNIFLTFIDDYSKCTRIFCIKSKA 200
++HI + +EK ++L+ ID +SK ++F ++SKA
Sbjct: 764 ILHI-DIFALEKRLYLSCIDKFSKFAKLFHLQSKA 797
>AY058502-1|AAL13731.1| 280|Drosophila melanogaster LD21171p
protein.
Length = 280
Score = 33.9 bits (74), Expect = 0.25
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 263 KKLQCDNGKEYLNRDIYDFIGHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMRE 436
K L DN + L + +++ I+L P E+NG ER++ + ++I RCL E
Sbjct: 93 KVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYRCLKDE 150
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +3
Query: 96 MVHIAQLDMVEKNIFLTFIDDYSKCTRIFCIKSKA 200
++HI + +EK ++L+ ID +SK ++F ++SKA
Sbjct: 41 ILHI-DIFALEKRLYLSCIDKFSKFAKLFHLQSKA 74
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 32.7 bits (71), Expect = 0.58
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 263 KKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDIGRCL 427
K + CDN + I + ++ +++ PP NG ER++ + ++I RCL
Sbjct: 867 KTIFCDNEPSINSESIKSLLKNRFNVDIANAPPLHSTSNGQVERFHSTLLEIARCL 922
>AF132185-1|AAD34773.1| 524|Drosophila melanogaster unknown
protein.
Length = 524
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 597 IDFTSINL*MFYIWFNTKKYFIRSFILYC--IAIVRFFKYAAVFITSGQYLL*ILASLIK 424
+ F+SIN + YIW + Y +R +++C I V AV + S L I A+L +
Sbjct: 26 VGFSSINSPLAYIWKLCRLYVLRPEVIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGR 85
Query: 423 HLPISIADL 397
+ + +L
Sbjct: 86 QKAVKMMEL 94
>AE014134-1350|AAF52565.1| 524|Drosophila melanogaster CG7115-PB,
isoform B protein.
Length = 524
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 597 IDFTSINL*MFYIWFNTKKYFIRSFILYC--IAIVRFFKYAAVFITSGQYLL*ILASLIK 424
+ F+SIN + YIW + Y +R +++C I V AV + S L I A+L +
Sbjct: 26 VGFSSINSPLAYIWKLCRLYVLRPEVIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGR 85
Query: 423 HLPISIADL 397
+ + +L
Sbjct: 86 QKAVKMMEL 94
>AE014134-1349|AAF52564.1| 524|Drosophila melanogaster CG7115-PA,
isoform A protein.
Length = 524
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 597 IDFTSINL*MFYIWFNTKKYFIRSFILYC--IAIVRFFKYAAVFITSGQYLL*ILASLIK 424
+ F+SIN + YIW + Y +R +++C I V AV + S L I A+L +
Sbjct: 26 VGFSSINSPLAYIWKLCRLYVLRPEVIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGR 85
Query: 423 HLPISIADL 397
+ + +L
Sbjct: 86 QKAVKMMEL 94
>AJ279888-1|CAB69645.1| 120|Drosophila melanogaster integrase
protein.
Length = 120
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 260 VKKLQCDNGKEYLNRDIYDFIGHK-GIELLPCPPYVHELNGVAERYNRSAMDI 415
+K + CDN + + + + + GI+++ PP NG ER++ + +I
Sbjct: 67 IKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEI 119
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,977,485
Number of Sequences: 53049
Number of extensions: 502929
Number of successful extensions: 1586
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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