Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120445.Seq
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    36   0.043
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    36   0.043
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    36   0.043
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +2

Query: 266  KLQCDNGKEYLNRDIYDFIGHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMREAKI 445
            KL  D GKE++N     F     IE +    Y    NG  ER+N++ M I    M++   
Sbjct: 1683 KLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHI----MKKKTA 1738

Query: 446  HRRYWPEVIKTAAYLKNRTI 505
                W + +  A Y  N  +
Sbjct: 1739 VPMEWDDQVVYAVYAYNNCV 1758


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +2

Query: 266  KLQCDNGKEYLNRDIYDFIGHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMREAKI 445
            KL  D GKE++N     F     IE +    Y    NG  ER+N++ M I    M++   
Sbjct: 1586 KLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHI----MKKKTA 1641

Query: 446  HRRYWPEVIKTAAYLKNRTI 505
                W + +  A Y  N  +
Sbjct: 1642 VPMEWDDQVVYAVYAYNNCV 1661


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +2

Query: 266  KLQCDNGKEYLNRDIYDFIGHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMREAKI 445
            KL  D GKE++N     F     IE +    Y    NG  ER+N++ M I    M++   
Sbjct: 1597 KLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHI----MKKKTA 1652

Query: 446  HRRYWPEVIKTAAYLKNRTI 505
                W + +  A Y  N  +
Sbjct: 1653 VPMEWDDQVVYAVYAYNNCV 1672


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +2

Query: 299 NRDIYDFIGHKGIELLPCPPYVHELNGVAERYNRSAMDIGRCLMREAKIHRRYWPEVIKT 478
           NRD  D++  + +     P     +N    RY R   + G+C+ + +++   Y+P    T
Sbjct: 686 NRD--DYVFSESVRYNAQPNAQSTINIFMTRYTRLGGNYGKCIKKPSEVKNYYYPGAYTT 743

Query: 479 AAYLK 493
              L+
Sbjct: 744 DGCLR 748


>AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical
           protein H22D07.1 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 558 WFNTKKYFIRSFILYCIAIVRFF 490
           +F+T  +++ SF++ CIAI R F
Sbjct: 113 FFSTFSFYLNSFVIACIAIDRVF 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,206,029
Number of Sequences: 27780
Number of extensions: 288875
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)