Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120445.Seq
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   7.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 20  KMTNVPFKNNRTKTNEILELIHTDLNGPHSTTGYGG 127
           ++ NV  KN   K+N  L  I TD         YGG
Sbjct: 62  QLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGG 97


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -1

Query: 709 IILLFNKLYNHSQCTLPTLLVGLYRPIYFSLKLLEPL 599
           II   +  YN++      L    YR +Y+++  +E +
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQI 117


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -2

Query: 537 FIRSFILYCIAIVRFF 490
           ++ SF+L CI++ R++
Sbjct: 123 YLSSFVLVCISMDRYY 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,451
Number of Sequences: 438
Number of extensions: 3956
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)