Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120445.Seq
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73560.1 68414.m08515 protease inhibitor/seed storage/lipid t...    28   8.0  
At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zi...    28   8.0  

>At1g73560.1 68414.m08515 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           GI:2627141 from (Picea abies) (Plant Mol. Biol. 42 (3),
           461-478 (2000)); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 147

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 338 ELLPCPPYVHELN 376
           +LLPC PY+H LN
Sbjct: 36  KLLPCQPYIHSLN 48


>At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 634

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 368 ELNGVAERYNRSAMDIGRCLMREAKIHRRYWPEVIK 475
           +LN V   YNR+AM + R L  +  +H+ +  E  K
Sbjct: 269 DLNKVQYSYNRTAMSLQRVLDEKKNLHQAFADETKK 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,875,264
Number of Sequences: 28952
Number of extensions: 252063
Number of successful extensions: 583
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)