Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120444.Seq
         (819 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P17501 Cluster: Major envelope glycoprotein precursor; ...   206   7e-52
UniRef50_P28977 Cluster: Envelope glycoprotein precursor; n=10; ...    61   4e-08
UniRef50_P27427 Cluster: Envelope glycoprotein precursor; n=3; D...    60   7e-08
UniRef50_Q4Q992 Cluster: Dynein heavy chain, putative; n=3; Leis...    35   2.8  
UniRef50_A5NWU4 Cluster: Small GTP-binding protein; n=1; Methylo...    34   5.0  
UniRef50_Q0CDW6 Cluster: Predicted protein; n=1; Aspergillus ter...    34   5.0  
UniRef50_A4ERP9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.7  

>UniRef50_P17501 Cluster: Major envelope glycoprotein precursor;
           n=21; Nucleopolyhedrovirus|Rep: Major envelope
           glycoprotein precursor - Autographa californica nuclear
           polyhedrosis virus (AcMNPV)
          Length = 512

 Score =  206 bits (502), Expect = 7e-52
 Identities = 105/175 (60%), Positives = 110/175 (62%)
 Frame = +1

Query: 238 PAQGNAQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKED 417
           P +   QKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEE+MKTL VGKED
Sbjct: 42  PPKETLQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEETMKTLNVGKED 101

Query: 418 LLMWGIRQQCEVGEELIDRWGSDSDECFRDTXXXXXXXXXXXW*NGXXXXXXXXXXXXXX 597
           LLMW IRQQCEVGEELIDRWGSDSD+CFRD                              
Sbjct: 102 LLMWSIRQQCEVGEELIDRWGSDSDDCFRDNEGRGQWVKGKELVKRQNNNHFAHHTCNKS 161

Query: 598 GDAAFLLRKCXXXXXXXXXXXXVRYTFWTLKGNPINVTVDTALHRDGVSMILKQK 762
                   K              +      +GNPINVTVDT LHRDGVSMILKQK
Sbjct: 162 WRCGISTSKMYSRLECQDDTDECQVYILDAEGNPINVTVDTVLHRDGVSMILKQK 216



 Score =  142 bits (345), Expect = 7e-33
 Identities = 60/67 (89%), Positives = 63/67 (94%)
 Frame = +3

Query: 498 FSRHEGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCGVSTSKMYSRLECHDDTDECQVYI 677
           F  +EGRGQWVKGKELVKRQNNNHFA+HTCNKSWRCG+STSKMYSRLEC DDTDECQVYI
Sbjct: 129 FRDNEGRGQWVKGKELVKRQNNNHFAHHTCNKSWRCGISTSKMYSRLECQDDTDECQVYI 188

Query: 678 LDAEGQP 698
           LDAEG P
Sbjct: 189 LDAEGNP 195



 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 30/49 (61%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = +2

Query: 119 MVGAIVLYVLLXXXXXXXXXXXXXX-QMKTGPYKIKNLDITPPKETRKR 262
           MV AIVLYVLL               QMKTGPYKIKNLDITPPKET ++
Sbjct: 1   MVSAIVLYVLLAAAAHSAFAAEHCNAQMKTGPYKIKNLDITPPKETLQK 49


>UniRef50_P28977 Cluster: Envelope glycoprotein precursor; n=10;
           Thogotovirus|Rep: Envelope glycoprotein precursor -
           Thogoto virus (isolate SiAr 126) (Tho)
          Length = 512

 Score = 60.9 bits (141), Expect = 4e-08
 Identities = 27/68 (39%), Positives = 37/68 (54%)
 Frame = +1

Query: 295 NENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCEVGEELIDR 474
           NE +  GY+  + AY YNGG +D NT     +      +++LL+WG   QC  G+   D 
Sbjct: 56  NELLTAGYRTAWVAYCYNGGLVDSNTGCNARLLHYPPSRDELLLWGSSHQCSYGDICHDC 115

Query: 475 WGSDSDEC 498
           WGSDS  C
Sbjct: 116 WGSDSYAC 123



 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = +3

Query: 525 WVKGKELVKRQNNNHFAYHTCNKSWRCGVSTSKMYSRLE 641
           W   KELV+R  N  FAYH CN  WRCGV+TS ++  L+
Sbjct: 133 WAPRKELVRRDANWKFAYHMCNIDWRCGVTTSPVFFNLQ 171


>UniRef50_P27427 Cluster: Envelope glycoprotein precursor; n=3;
           Dhori virus|Rep: Envelope glycoprotein precursor - Dhori
           virus (strain Indian/1313/61) (Dho)
          Length = 521

 Score = 60.1 bits (139), Expect = 7e-08
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
 Frame = +1

Query: 265 VEITIVETDYNE---NVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGI 435
           ++I +V+T       N  IGY+  ++ Y YNGGSLD NT     +   +  + +L  W  
Sbjct: 48  IQIKVVKTSVATKGLNFHIGYRAVWRGYCYNGGSLDKNTGCYNDLIPKSPTESELRTWSK 107

Query: 436 RQQCEVGEELIDRWGSDSDECFRD 507
            Q+C  G + +D WGSD+  C+ +
Sbjct: 108 SQKCCTGPDAVDAWGSDARICWAE 131



 Score = 56.0 bits (129), Expect = 1e-06
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +3

Query: 537 KELVKRQNNNHFAYHTCNKSWRCGVSTSKMYSRLE 641
           KEL K  NNNHFAYHTCN SWRCG+ ++ +  RL+
Sbjct: 141 KELKKYSNNNHFAYHTCNLSWRCGLKSTHIEVRLQ 175


>UniRef50_Q4Q992 Cluster: Dynein heavy chain, putative; n=3;
            Leishmania|Rep: Dynein heavy chain, putative - Leishmania
            major
          Length = 4044

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +1

Query: 283  ETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQ--QCEVG 456
            ET+++E    G K Y ++Y  + GS  P  R    +  L V +EDLL +G+ +  +CE+G
Sbjct: 3361 ETEWSE-WYAGEKAY-ESYPASLGSYSPWQR----LLILKVFREDLLNYGLSRLIECELG 3414

Query: 457  EELIDRWGSDSDECFRDT 510
            +   +    D D C++D+
Sbjct: 3415 KAFTESPAFDLDGCYQDS 3432


>UniRef50_A5NWU4 Cluster: Small GTP-binding protein; n=1;
           Methylobacterium sp. 4-46|Rep: Small GTP-binding protein
           - Methylobacterium sp. 4-46
          Length = 703

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 37/104 (35%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
 Frame = +3

Query: 246 RKRAKGR-GNHHRGDGLQRKRDYWL--QGVLPGVCVQRRLAGS--QHTRRRIHENADCGQ 410
           R+ A+GR G+  RG G   +R +    +G  PG    RR  G   Q  RRR   +A  G+
Sbjct: 313 REPARGRPGHRERGPGRAHRRPHGAHRRGRGPGGRGPRRRGGGPRQARRRRDRRDAAGGR 372

Query: 411 RRFAHVGYQAAVRGG--RRVNRPLGQ*QR*VFSRHEGRGQWVKG 536
           R  A  G  AA R G  RR   P  Q +R   +   G GQ   G
Sbjct: 373 RGAAGPGGAAAARAGPRRRPAHPRPQGRR---APRRGAGQGAGG 413


>UniRef50_Q0CDW6 Cluster: Predicted protein; n=1; Aspergillus
           terreus NIH2624|Rep: Predicted protein - Aspergillus
           terreus (strain NIH 2624)
          Length = 322

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
 Frame = +1

Query: 325 YYQAYAYNGGSLDPNTRVEESMKTLTVGKED-----LLMW-GIRQQCEVGEELIDR---W 477
           YY AY+  GG+ DP+T     M++LT  K       L MW G+R+    GE +I+R   W
Sbjct: 243 YYFAYSKPGGAYDPDT-----MQSLTDCKRGGLLVRLSMWPGLRKLARHGEYVIEREVVW 297

Query: 478 GSDSDECFRDT 510
               + C++++
Sbjct: 298 TESMERCYQES 308


>UniRef50_A4ERP9 Cluster: Putative uncharacterized protein; n=1;
           Roseobacter sp. SK209-2-6|Rep: Putative uncharacterized
           protein - Roseobacter sp. SK209-2-6
          Length = 125

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +1

Query: 244 QGNAQKDV--EITIVETDYNENVIIGYKGYYQAYA--YNGGSLDPNTRVEESMKTLTVGK 411
           +G  + DV  ++T+     +  VI+   G Y+A A  ++ G+++   + + S +T+T+G 
Sbjct: 37  EGMQRADVALQVTVAHRKRSGRVIVDGSGDYEARAKSFDSGAVEYYFKTDVSKETITIGP 96

Query: 412 EDLLMWGIR 438
           +   +W IR
Sbjct: 97  QGDALWDIR 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,582,933
Number of Sequences: 1657284
Number of extensions: 15970520
Number of successful extensions: 46456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46420
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)