Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120444.Seq
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    28   1.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.4  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   5.6  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   5.6  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   5.6  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   5.6  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    26   7.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   7.4  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   9.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.8  

>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 298 ENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTL 399
           ENVI   +G  +   +    +DPN  +E +MKTL
Sbjct: 105 ENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTL 138


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 527 PLAAAFVSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSST 375
           PL++A  +   S+ S P  S+NS+ T+     P  S SS  + +    SST
Sbjct: 291 PLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSST 341


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 270 NHHRGDGLQRKRDYWLQGVL 329
           N H+G G+  K D W  GVL
Sbjct: 223 NVHKGFGIDEKSDIWALGVL 242


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 241 AQGNAQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGS 357
           ++G A +D++   +  DYN N+ I   G+   ++Y G S
Sbjct: 130 SKGVAHRDLKPENILLDYNGNLKISDFGFASLFSYKGKS 168


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 436 RQQCEVGEELIDRWGSDSDECF 501
           + Q E+ EEL+D  GSD D  F
Sbjct: 46  KTQTEINEELVDLIGSDFDTSF 67


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 404 TVSVFMDSSTRVLGSSEPPLYAYAW 330
           T  ++M+ ++ + G+S PP Y Y +
Sbjct: 194 TTPLYMERASYLFGASNPPAYTYTY 218


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 630 SRLECHDDTDECQVYILDAEGQ 695
           SR EC DD DE   +  DA+G+
Sbjct: 274 SRCECLDDLDEPTHFAYDAQGR 295


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 601 RHDLLHVWYAK*LLFCRF 548
           R+D LHVW    LL C+F
Sbjct: 20  RYDTLHVWKLIKLLICKF 37


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 271 ITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTL 399
           +  + T YN+   IG  GY + Y+       P+  ++ES+K L
Sbjct: 135 VRYIRTHYNDEFCIGVAGYPEGYS-------PDDDIDESIKHL 170


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 506 SRKHSSLSLPQRSINSSPTSHCCLIPHMSKSS-LPTVSVFMDSSTRVLGSSEP 351
           S   SS S    S +S P+S    I  MS S+ + TV+V   SS+    S  P
Sbjct: 217 SHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,448
Number of Sequences: 5004
Number of extensions: 63747
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)