Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120444.Seq
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0652 - 25906001-25906237,25906345-25906830                       29   3.4  
04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920     29   3.4  
06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407           28   7.8  

>11_06_0652 - 25906001-25906237,25906345-25906830
          Length = 240

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
 Frame = -2

Query: 662 LVGVVVALEPAVHFRSRNAASPRFVARVVRKVIVILPFHQLFAF---DPLAAAFVSRKHS 492
           +V VV A+  AV    RNAAS + +A   ++V  ILP     A    D  AA  + R   
Sbjct: 7   IVKVVQAISKAVSTARRNAASCKELAERAQQVAKILPDSNSKAVARGDATAANILRRLRG 66

Query: 491 SLSLPQRSINSSPTSHCCLI-PHMSKSSLPTVSVFMDSSTRV 369
           +L    + + S  +   CL  P M  +     + F D + R+
Sbjct: 67  ALDDALQLVESCQSGGGCLSWPLMLVTGDGLAAKFADVNARI 108


>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
          Length = 128

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 194 ARCSAPPQRQNAPPPKARIKQ*RLPSRLCVSYRSL--GMTDLLVALRHLIYPTAIWPRD 24
           AR   PP RQ   PP+A   +  +P    + Y SL     D L +LR  +   + W R+
Sbjct: 65  ARAVPPPPRQQGEPPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVRLLSDWGRN 123


>06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407
          Length = 473

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 241 AQGNAQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKT 396
           A G A       +VE  + +N+ +      + + Y+GGSL P   V+ S+++
Sbjct: 19  AAGGAWPPPPPHVVELSFLDNLQVSKAAIQRLFFYDGGSLPPFESVDRSLQS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,091,292
Number of Sequences: 37544
Number of extensions: 464549
Number of successful extensions: 1389
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)