Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120444.Seq
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      31   1.5  
SB_44981| Best HMM Match : AA_permease (HMM E-Value=9.6e-13)           29   3.4  
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)             29   3.4  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)                     28   7.9  
SB_31604| Best HMM Match : Pox_A32 (HMM E-Value=0.019)                 28   7.9  
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 301 NVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCEVGEELIDRWG 480
           +V I  K   +A  ++ G+     +++E MK L   K   L + +RQ   +   L++R G
Sbjct: 362 HVGISLKADMKAILHDYGAELSKEKMKEYMKALKTKKFSKLEFCLRQPYTIA--LVERHG 419

Query: 481 SDSDECF 501
             SDECF
Sbjct: 420 MMSDECF 426


>SB_44981| Best HMM Match : AA_permease (HMM E-Value=9.6e-13)
          Length = 446

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 563 VILPFHQLFAFDPLAAAFVSRKHSSLSLPQRSINSSPTSHCCLI 432
           +I+P+  L  F PLA AFVSR   +      S+ +   + CCL+
Sbjct: 284 LIIPYQNLSHFAPLAEAFVSRGFPAAKY-VISVGALCATSCCLM 326


>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
          Length = 728

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 563 VILPFHQLFAFDPLAAAFVSRKHSSLSLPQRSINSSPTSHCCLI 432
           +I+P+  L  F PLA AFVSR   +      S+ +   + CCL+
Sbjct: 566 LIIPYQNLSHFAPLAEAFVSRGFPAAKY-VISVGALCATSCCLM 608


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 533 FDPLAAAFVSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRV 369
           F   A+   S      SLP    +S+ +SH  L+   S S+ PT SV   S+  +
Sbjct: 669 FSTTASINFSSSLRQTSLPTLVFSSTGSSHSALLSSNSNSATPTTSVLPSSTVNL 723


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 179  PPQRQNAPPPKA-RIKQ*RLPSRLCVSYRSLGMTDLLVALRHLIYPTAIWPRDTRHVVK 6
            PP++  APPP + RI   R  S    S  S  + D+L   +  I P    P D RH  K
Sbjct: 3145 PPRKMRAPPPPSTRIPDVRYRSSSQDSRDSDELPDILPPPKPPIKPKPKVPEDKRHKPK 3203


>SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)
          Length = 242

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 313 GYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCEVGEEL-IDRWGS 483
           G+ G+  A     G + P+  + E  ++  +   +L M  ++Q CE+G +L ID +G+
Sbjct: 19  GFAGFIAAQLAEHG-VPPSNLIVEITESAVMADPELAMGQLQQLCELGVQLSIDDYGT 75


>SB_31604| Best HMM Match : Pox_A32 (HMM E-Value=0.019)
          Length = 802

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
 Frame = +1

Query: 268 EITIVETDYNENV---IIGY---KGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMW 429
           ++T     + EN+   ++ Y   K   +A  ++ G+     +++E MKTL   K   L +
Sbjct: 556 QLTSTTKPFRENIAALVVFYTPSKADMKAILHDYGAELSEEKMKEYMKTLKTKKFSKLEF 615

Query: 430 GIRQQCEVGEELIDRWGSDSDECF 501
            +R    +   L+ R G  SDECF
Sbjct: 616 CLRHPYTIA--LVKRHGMMSDECF 637


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 600 RCGVSTSKMYSRLECHDDTDECQVYILDAEGQP 698
           +CG ST+ M + LE +DD D  Q   L  +G P
Sbjct: 63  QCGTSTNTMGALLEAYDD-DGMQAIYLVTDGMP 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,420,331
Number of Sequences: 59808
Number of extensions: 521703
Number of successful extensions: 1616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)