Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120444.Seq
         (819 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060396-1|AAL25435.1|  243|Drosophila melanogaster LD30158p pro...    29   5.8  
AY052132-1|AAK93556.1|  920|Drosophila melanogaster SD08128p pro...    29   5.8  
AE014296-3415|AAF51638.1|  920|Drosophila melanogaster CG11399-P...    29   5.8  

>AY060396-1|AAL25435.1|  243|Drosophila melanogaster LD30158p
           protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 521 AAAFVSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVL---GSSEP 351
           AAA V+    S S P  + +++PT++ C I  ++ +S  T +    SS+  L    SS  
Sbjct: 75  AAAGVTSSQQSPSTPPSAASTAPTTNSCTISGVNSNSSSTATTTSTSSSPSLTTTSSSMS 134

Query: 350 PL 345
           PL
Sbjct: 135 PL 136


>AY052132-1|AAK93556.1|  920|Drosophila melanogaster SD08128p
           protein.
          Length = 920

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 521 AAAFVSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVL---GSSEP 351
           AAA V+    S S P  + +++PT++ C I  ++ +S  T +    SS+  L    SS  
Sbjct: 752 AAAGVTSSQQSPSTPPSAASTAPTTNSCTISGVNSNSSSTATTTSTSSSPSLTTTSSSMS 811

Query: 350 PL 345
           PL
Sbjct: 812 PL 813


>AE014296-3415|AAF51638.1|  920|Drosophila melanogaster CG11399-PB
           protein.
          Length = 920

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 521 AAAFVSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVL---GSSEP 351
           AAA V+    S S P  + +++PT++ C I  ++ +S  T +    SS+  L    SS  
Sbjct: 752 AAAGVTSSQQSPSTPPSAASTAPTTNSCTISGVNSNSSSTATTTSTSSSPSLTTTSSSMS 811

Query: 350 PL 345
           PL
Sbjct: 812 PL 813


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,325,889
Number of Sequences: 53049
Number of extensions: 769068
Number of successful extensions: 2549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2549
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3860063376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)