Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120444.Seq
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 31 0.75
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 31 0.75
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 30 2.3
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 5.3
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 29 5.3
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 29 5.3
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 29 5.3
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 29 5.3
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 28 9.2
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 270 NHHRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTRRRIHENADCGQRRFAH 425
NHH L R R W++ V GVC++ A + + + CG+ R H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 270 NHHRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTRRRIHENADCGQRRFAH 425
NHH L R R W++ V GVC++ A + + + CG+ R H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -2
Query: 218 FCTDPFSFARCSAPPQRQNAPPPKA 144
F P FA SAPPQ APPP+A
Sbjct: 86 FAAQPAQFAVQSAPPQPIVAPPPQA 110
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 464 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 363
N P SH +PH S S+ + +++DS V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 464 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 363
N P SH +PH S S+ + +++DS V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 113 LCVSYRSLGMTDLLVALRHLIYPTA 39
LCV+YRS+G D L L L P A
Sbjct: 224 LCVAYRSVGANDALKLLNDLYIPRA 248
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 113 LCVSYRSLGMTDLLVALRHLIYPTA 39
LCV+YRS+G D L L L P A
Sbjct: 280 LCVAYRSVGANDALKLLNDLYIPRA 304
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 113 LCVSYRSLGMTDLLVALRHLIYPTA 39
LCV+YRS+G D L L L P A
Sbjct: 225 LCVAYRSVGANDALKLLNDLYIPRA 249
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 113 LCVSYRSLGMTDLLVALRHLIYPTA 39
LCV+YRS+G D L L L P A
Sbjct: 246 LCVAYRSVGANDALKLLNDLYIPRA 270
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 544 NSLPLTHWPRPSCRENTHRCHCP 476
NS PLTHW P +T C CP
Sbjct: 657 NSCPLTHWCHPGPDASTTMC-CP 678
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,326
Number of Sequences: 27780
Number of extensions: 379615
Number of successful extensions: 1111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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