Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120444.Seq
         (819 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02425.1 68417.m00328 expressed protein                             28   6.5  
At1g21450.1 68414.m02682 scarecrow-like transcription factor 1 (...    28   6.5  
At5g66670.1 68418.m08404 hypothetical protein contains Pfam:PF05...    28   8.6  
At2g03180.1 68415.m00271 hypothetical protein                          28   8.6  
At1g40230.1 68414.m04784 hypothetical protein                          28   8.6  

>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 503 RKHSSLSLPQRSINSSPTSHCCLI-PHMSKSSLPTVSVFMDSSTRVLGSS 357
           R+ +S S+  RS + S T  CC I  H + S LP  +V  DSS  + G +
Sbjct: 100 RRRNSRSVSGRSSDRSGTRRCCSIGAHGTCSDLP-FAVGTDSSGELFGEA 148


>At1g21450.1 68414.m02682 scarecrow-like transcription factor 1
           (SCL1) identical to scarecrow-like 1 GB:AAF21043
           GI:6644390 from [Arabidopsis thaliana]
          Length = 593

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 271 ITIVETDYNENVIIGYKGYYQAYAYNGG---SLDPNTRVEESMKTLTVGKEDLLMWGIRQ 441
           +T+VE D N N    +  + +AY Y      SLD  T   ES + + V ++ L    +  
Sbjct: 458 VTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLD-MTLPRESQERMNVERQCLARDIVNI 516

Query: 442 QCEVGEELIDRW 477
               GEE I+R+
Sbjct: 517 VACEGEERIERY 528


>At5g66670.1 68418.m08404 hypothetical protein contains
           Pfam:PF05055: Protein of unknown function (DUF677)
          Length = 408

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = -2

Query: 749 IILTPSR*SAVSTVTLMGLPFSVQNVYLTLVGVVVALEPAVHFRSRNAASPRFVARVVRK 570
           ++LT       + VT++ + F V+N+ + +  ++  +  AV  R  N  + RF  + ++K
Sbjct: 299 LVLTMELGVQANNVTMVNIKFEVENLSIRISSILKTVNFAVD-REENEMATRFAMQEIKK 357

Query: 569 VI 564
            +
Sbjct: 358 KV 359


>At2g03180.1 68415.m00271 hypothetical protein
          Length = 120

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 462 LFAHLALLPDTPHEQIFFAHSQRFHGFFDACVGIQRASVVRIR 334
           +F   A +  +   +I FAH  R H F D  V I  +S  RI+
Sbjct: 3   IFKEFAKIKKSVEAKIGFAHKDRLHKFLDHHVVIDGSSEQRIQ 45


>At1g40230.1 68414.m04784 hypothetical protein
          Length = 303

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 572 KVIVILPFHQL--FAFDPLAAAFVSRKHSSLSLPQRSINSSPTSHCCLIPHMS 420
           K+  +LP H +  + F P ++ F+S++ +S +     ++   TS    +PH +
Sbjct: 36  KISSLLPHHSISPYPFPPTSSLFLSKRSTSKTHSHSRLSLDQTSLTISLPHQT 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,302
Number of Sequences: 28952
Number of extensions: 351355
Number of successful extensions: 1034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)