Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120443.Seq
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    29   0.51 
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    28   1.2  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    27   2.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   3.6  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   6.2  

>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 449 LRCRLKTTMSIGRPFFYPSFSVIKNEHKICQFGR--VFH 559
           ++CR+K  M      ++  FS +   +K+CQFGR  +FH
Sbjct: 20  VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRIHIFH 58


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 195 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 100
           EY+P SI G+K  K  +  K+   IKN +  T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 192 YVPTS--ISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 58
           Y PT   +  +K   N+V +K+ S   + +NT A PT   + +N +D
Sbjct: 60  YRPTKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPTKHSLDENEKD 106


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -2

Query: 198 TEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT------AAPTLLMVSDNTQDTNMSE*I 37
           T  VP++ SG KK ++S  A +    KN+ N        A P LL+  +N   ++ SE +
Sbjct: 646 TPAVPSAKSGLKKDQSSEVANKDVVSKNKDNIAILADREARPQLLLDDNNDSSSSSSEHL 705

Query: 36  KNF 28
            +F
Sbjct: 706 ISF 708


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 615 PTVKQNVFIVVNHFFLRLDILRSSCMTGITLR 710
           PT+ + V +    +F RLD+L +SC  G+ LR
Sbjct: 159 PTLNKQVPLCETDYFRRLDLLCASC--GMALR 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,756
Number of Sequences: 5004
Number of extensions: 59116
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)