Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120443.Seq
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609...    28   6.5  
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    28   8.6  
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437...    28   8.6  

>07_01_1104 -
           10160493-10160599,10160632-10160637,10160930-10160975,
           10161053-10161190,10161275-10161679,10163193-10163330,
           10163401-10163482,10163596-10163943,10164294-10164655,
           10165154-10165209,10166428-10166558,10166564-10166628,
           10169191-10169631
          Length = 774

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = -3

Query: 455 NAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEV 276
           N +I A    ++++  +  + E+    E+RD +   F S         ++  +S I+D+V
Sbjct: 75  NDSIVACLLEESSLPYDKLVDEIYRRMELRDGVTKSFISSAVNNIGQRMSYGISDIHDQV 134

Query: 275 LTRDFITKIW 246
           L  +  +K+W
Sbjct: 135 LVDESKSKLW 144


>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
            15222420-15226194
          Length = 2502

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 335  LNETFNNNVAPLLSSIYDEVLTRDFITKIWLNLRR*RSSCPLHRLLQN 192
            +N T +  +  + +  +DE++ R FI  I +N     SSC +H L+++
Sbjct: 1428 INVTKDLGMEKVAARYFDELIGRRFIQPIEINYNDEVSSCTVHDLVRD 1475


>01_05_0769 -
           25042022-25042447,25042856-25043234,25043714-25043763,
           25044222-25044442,25045085-25045385
          Length = 458

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
 Frame = -2

Query: 285 RRSVNARFHH*NMAKFKTVALKLPVAPSTTEYVPTSISGS--------KKRKNSVPAKQR 130
           RR +N  FHH  +   KTV    P+     +++PT  +           K    +  K+ 
Sbjct: 161 RRILNPAFHHEKIKLPKTVVKNAPLRIVKLKFLPTKNNRRLREIEREVSKLLRGIIGKRE 220

Query: 129 SSIKNRRNTTAAPTLLMVSDNTQDTN 52
            +IKN   +      L+V  N +++N
Sbjct: 221 RAIKNGETSNGDLLGLLVESNMRESN 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,180,996
Number of Sequences: 37544
Number of extensions: 371388
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)