Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120443.Seq
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_36407| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)                   28   6.6  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)                      28   8.8  

>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 701 NACHAGRTQNVQTQEEVINNNKYILFNSWYTKIKQPEWP 585
           N CHAG  Q+ +T +EV+   +YI  N  Y K+++P  P
Sbjct: 39  NGCHAGYRQDNKTIDEVV---EYIQHN--YNKVRRPSTP 72


>SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = -2

Query: 246 AKFKTVALKLPVAPSTTE-----YVPTSISGSKKRKNSVPAKQRS-SIKNRRNTTAAPTL 85
           +K K ++L +P   S  +     Y PTS   S KR +S+P   R  SI N  +T+ A  +
Sbjct: 216 SKKKIMSLPMPSLSSQKKTPKVIYSPTSSRSSNKRHSSLPGPSRQRSITNVSDTSTAGLI 275

Query: 84  LMVSDNTQDTN 52
            +   + +D N
Sbjct: 276 CLDDTDDEDQN 286


>SB_36407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 353 SEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKIWLNLRR*RSSC 216
           ++F S      N+++ P+L  + +E   +DF   IW  L R R  C
Sbjct: 221 TKFLSFFVSHANSSINPILYILLNEGFRKDFNKAIWTCLSRSRDGC 266


>SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 332 NETFNNNVAPLLSSIYDEVL-TRDFITKIWLNLRR*RSSCPLH-RLLQNTCPLRLAAARK 159
           N +   +V  +   + D++L +RDFIT +  N  R R   P+H RLL+    L   A  +
Sbjct: 373 NNSTPKDVIVMTPKVGDKMLNSRDFITTVNDNHMRFRGGNPVHDRLLEGITILTDRAREQ 432

Query: 158 EKTQ 147
           EK +
Sbjct: 433 EKVE 436


>SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)
          Length = 551

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 246 AKFKTVALKLPVAPSTTEYVPTSIS 172
           A++K V +K+P +  T EYVP ++S
Sbjct: 282 AEWKKVVMKVPGSEKTIEYVPQNVS 306


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 234 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNT 64
           TVA K+ V P TT    T+++       +    Q +++     TTAAP    V + T
Sbjct: 800 TVAAKITVVPETTAAPDTTVAPETPVATNTTVAQETTL--TPETTAAPVTTSVPETT 854


>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1250

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 362 KLYSEFYSLLNETFN--NNVAPLLSSIYDEVLTRDFI 258
           KLY EF  L  E+FN  +N+    ++  DE + +D++
Sbjct: 336 KLYPEFIKLAKESFNTIDNLTSCKNASQDESIRQDYV 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,383,170
Number of Sequences: 59808
Number of extensions: 447403
Number of successful extensions: 1249
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)