Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120443.Seq
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    31   1.1  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    31   1.1  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine r...    29   3.3  
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    29   4.4  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   5.8  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   5.8  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -2

Query: 228  ALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLL--MVSDNTQDT 55
            +L   V  ST  +  TS   SK   + VP++  S+  N   +T + TLL   +S +TQ T
Sbjct: 1387 SLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLSSTISGSTQHT 1446

Query: 54   NMSE 43
             MS+
Sbjct: 1447 TMSK 1450


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 407 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 279
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 407 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 279
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 407 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 279
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein89 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 676 KMSKRKKK*LTTINTFCLTVGTLRSSSPSGLV--ARPMWDLVKNTPELADFVFIFDHT 509
           K  K+ +K LTT+ T C+ +    S  P G++   + +W        LA+ V +F H+
Sbjct: 253 KSFKKSRKDLTTVITICIAISYFVSEFPLGIIYFYKAVWRGNLTYLNLAENVKLFCHS 310


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 695 CHAGRTQNVQTQEEVINNNKYILFNSWYTKIKQPEWPSS 579
           CH     N         NN Y  FN+WYT   +  +P S
Sbjct: 561 CHDCNNNNASPFGSNFFNNNYNSFNNWYTNKNKNYYPYS 599


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 134 CLAGTEFFLFLLPLIEVGTYSVV 202
           C AG   FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 329 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 487
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 477  DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 319
            ++  F+R   NS E++ TD      +     R LRNA   +   L  +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 80  IKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEVGTYSVVDGATGNLSATVLNL 244
           I+ V A  +L  FF       G  FF+FL+P++ +  + +V G   +++  +L L
Sbjct: 58  IQIVNAIYILYFFFTLFMAFFGATFFVFLIPVLLI-VFPLVTGLMHDVNEFLLGL 111


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -2

Query: 210 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQDT 55
           AP+TT   PT+ + +     +VP    ++      TT  PT    +  T  T
Sbjct: 195 APTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTT 246


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -2

Query: 210 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSDNTQD 58
           APST    P  +S S       P   + S+      TAA T     DN QD
Sbjct: 751 APSTPLQQPKPLSHSSSMNGFNPPVHKRSLSQSLADTAASTAAYALDNLQD 801


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,296
Number of Sequences: 27780
Number of extensions: 338973
Number of successful extensions: 1049
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)