Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120443.Seq
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02570.1 68417.m00351 cullin family protein similar to cullin...    30   1.3  
At4g39753.1 68417.m05629 kelch repeat-containing F-box family pr...    29   2.3  
At5g36920.1 68418.m04425 expressed protein predicted protein, Ar...    28   5.4  
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ...    28   7.2  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   7.2  
At4g08760.1 68417.m01444 hypothetical protein                          27   9.5  
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ...    27   9.5  

>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -3

Query: 443 PASKKRQTAVL--TNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 270
           PA    Q  +L  T  N+   K   +   +LY ++     E  N+ V P L   +DE + 
Sbjct: 32  PAFDSEQYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYINSTVLPALREKHDEFML 91

Query: 269 RDFITKIWLN 240
           R+ + K W N
Sbjct: 92  RE-LFKRWSN 100


>At4g39753.1 68417.m05629 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 390

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 273 NARFHH*NMAKFKTVALKLPVAPSTTEY-VPTSISGSKKRKNSVPAKQRSSIKNRRNTTA 97
           +ARFHH     F  V LKLP  P  + Y +     G   ++     K++S++    ++ A
Sbjct: 76  HARFHHKTQEHFFHVCLKLPDRPLPSWYTLWIKPQGFDDKEEEKKKKKKSTLVQVPSSYA 135

Query: 96  APTLLMV 76
           + T L+V
Sbjct: 136 SQTPLLV 142


>At5g36920.1 68418.m04425 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 82

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 388 NSAKFALVSTAVCLFLLAGIAALSLEDDDVDRSAIFLP 501
           N++   L+S  +CL  + G+   S+ DDD+   AI+ P
Sbjct: 5   NTSHVLLLSLLLCLMFVIGLVEASIPDDDMG-PAIYTP 41


>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
           similar to SP|Q92973 Importin beta-2 subunit
           (Transportin) {Homo sapiens}; contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 891

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 692 HAGRTQNVQTQ-EEVINNNKYILFNSW 615
           H  R+++VQT+  +V+N  K++L NSW
Sbjct: 845 HEIRSEDVQTEVSQVLNGYKHMLGNSW 871


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 646 TTINTFCLTVGTLRSSSPSGLVA 578
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


>At4g08760.1 68417.m01444 hypothetical protein
          Length = 521

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 227 RSSCPLHRLLQNTCPLRLA 171
           RS+CP+  + ++ CP+RLA
Sbjct: 363 RSACPIRPVRRSVCPIRLA 381


>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
           protein contains Pfam domain PF00076: RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 461

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 227 RSSCPLHRLLQNTCPLRLA 171
           RS+CP+  + ++ CP+RLA
Sbjct: 125 RSACPIRPVRRSVCPIRLA 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,607
Number of Sequences: 28952
Number of extensions: 303649
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)