Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120442.Seq
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    73   6e-14
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.0  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.0  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 35/72 (48%), Positives = 43/72 (59%)
 Frame = +2

Query: 503 PNLYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV 682
           P LYQHLF FFGHPEVYILI+P FG++SHII      K  F                 +V
Sbjct: 235 PVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMV 293

Query: 683 *AHHIFTVGIDM 718
            +HH+FTVG+D+
Sbjct: 294 WSHHLFTVGLDV 305



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 31/66 (46%), Positives = 40/66 (60%)
 Frame = +1

Query: 61  N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 240
           N LVPL++GAPD+A+PR+NN  F              + E G G G TVYPPLSS  +H 
Sbjct: 87  NYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHS 146

Query: 241 GRSVDL 258
           G ++DL
Sbjct: 147 GPAIDL 152



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 35/85 (41%), Positives = 43/85 (50%)
 Frame = +3

Query: 255 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 434
           LAI SL L GISS                   S  Q+PLF  A+ IT+          AG
Sbjct: 152 LAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAG 211

Query: 435 AITILLTDRNLNTSFFDPAGGGDPI 509
            + +L +DRNLNTSF+ P GGGDP+
Sbjct: 212 GLFMLFSDRNLNTSFYAPEGGGDPV 236



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +1

Query: 718 DTRAYFTSATIIIAGP 765
           DTRAYF++AT++IA P
Sbjct: 306 DTRAYFSAATMVIAIP 321


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 589 YYFTRKRKKRNLWLFRNNLCYTSNWVIRIHCLSSSYIHCRYRYDT 723
           YY T   KK ++  F  +LCYT       +      ++C Y Y T
Sbjct: 190 YYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYST 234


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 622  LWLFRNNLCYTSNWVIRIHCLSSSYIH 702
            LWLF NN+  ++ W  ++    S+++H
Sbjct: 3958 LWLFINNIHLSTPWAEKLPSKMSNHLH 3984


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +1

Query: 490  LEEETQFISTFILIFWTS*SLYFNFTRIWDNFPYYFTRKRKKRNLWLFRNNLCY 651
            L    Q  S  I +F     LY   T + D F   FT      +LWLFR N  Y
Sbjct: 3472 LANRKQLFSRRIGMFENIQKLYSPSTILKDYFSSIFTNYS---DLWLFRKNFSY 3522


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 260 SKSTDLPLCAILDESGG*TVHPVPAPFST 174
           S +TDL +   +  SGG T+H  P  FST
Sbjct: 9   SMNTDLVMRTKICPSGGETIHGEPDGFST 37


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 132 TPTPLPYIINFKKNCRKWCRNRMNS 206
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,028
Number of Sequences: 5004
Number of extensions: 41848
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)