Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120442.Seq
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   30   1.8  
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      29   5.4  
SB_7244| Best HMM Match : YL1 (HMM E-Value=0.57)                       28   7.2  
SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)                      28   9.5  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 718 DTRAYFTSATIIIAGP 765
           DTRAYFT+AT+IIA P
Sbjct: 4   DTRAYFTAATMIIAVP 19


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 535 WTS*SLYFNFTRIWDNFPYYFTRKRKKRNLWLFRNNLCYTSNWVI 669
           W++  LY   + +W N   Y      + N  L+ N+ C  SN VI
Sbjct: 326 WSNAVLYTYHSCLWSNAVLYTNHSCLRSNAVLYTNHSCLRSNAVI 370


>SB_7244| Best HMM Match : YL1 (HMM E-Value=0.57)
          Length = 412

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 630 QPKVSFFPLSCEIIWEIIPNPGKIK 556
           Q  +  F  +C++ WE++  PGK K
Sbjct: 51  QEAIDKFEKACDVYWEVLDKPGKRK 75


>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
          Length = 414

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 143 GGRSQNLILFIRGNAISGAPSI 78
           GG S+NLI F  G  I G PS+
Sbjct: 99  GGESKNLINFALGQDIGGVPSV 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,549
Number of Sequences: 59808
Number of extensions: 295313
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)