Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120442.Seq
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 592 YFTRKRKKRNLWLFRNNLCYTSNWVIRIHCLSSS 693
           +FT K K+    L R N+C     V+R H  SSS
Sbjct: 245 FFTMKNKRTRTQLLRENICKYLLEVLRRHLASSS 278


>AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical
           protein Y55H10A.2 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 481 LILLEEETQFISTFILIFWTS*SLY-FNFTRIWDNFPYYFTRKRKKRNLWLFRNNLCYTS 657
           L+L  +   F + + +  + S  LY    ++   NF  Y  R R+ RN+ LF+   C   
Sbjct: 233 LLLFPDILLFANPWNITKFYSTPLYTMTLSKTMVNFMIYMIRYRELRNIILFKIIACLPQ 292

Query: 658 NWVI 669
            W I
Sbjct: 293 KWSI 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,900,580
Number of Sequences: 27780
Number of extensions: 237680
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)