Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120441.Seq
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)                   30   1.8  
SB_19362| Best HMM Match : M (HMM E-Value=0.0014)                      29   3.1  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
          Length = 167

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +2

Query: 524 FDQIKHVAFRNYRLVTRLDAHVR*IS*TIGGSHQHDAANAAQRVEQHQLYFDQFSVEHHK 703
           FDQ KH+   + R+      H+   S  I   HQ      + R+ +HQ +  ++S   +K
Sbjct: 23  FDQ-KHITEYSNRIYKH-QKHITEYSNRIY-KHQKHLTEYSNRIYKHQKHLTEYSNRIYK 79

Query: 704 HQWYAQQFADRYRK 745
           HQ +  ++++R  K
Sbjct: 80  HQKHITEYSNRIYK 93


>SB_19362| Best HMM Match : M (HMM E-Value=0.0014)
          Length = 722

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
 Frame = +3

Query: 342 TATNIRRAGKNSSSKRHVDEQRQPNKSQPN*SIFRIVQRDDGRAQ------SKRAAPRGV 503
           T   +R+ G N +      E    + S P+ + F + +R+D R        S R +P+ +
Sbjct: 23  TLERLRKIG-NGTLGSETGEMNLLSTSTPHNNDF-LTERNDIRGSYSPQRTSPRRSPQSI 80

Query: 504 GN-AKDVILTRLNTLLSEITDSLPDLTL----MLDKLAEQLVEAINTMQQ 638
              A+D ++  L   +S++ D L    L     ++K  E L+E+ N MQQ
Sbjct: 81  STTARDNLVQALGLQVSKLEDDLKVSLLSYFEQVEKQKEDLIESFNVMQQ 130


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 194 CSATGRQTSKAFAKSKRTLRKCPPCI*PCYDTIRPHR 84
           C  T R         + TLR C   + PC  T+RPHR
Sbjct: 240 CRYTLRPCRYTLRPCRYTLRPCGYTLRPCGYTLRPHR 276


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
 Frame = +3

Query: 507 NAKDVILTRLNTLLSEITDSLPDLTLMLDK--LAEQLVEAI---NTMQQTQRNEL 656
           N K+ ++ ++NTL +E+T S+ ++    DK  L E LV+ +   N++  +++ EL
Sbjct: 211 NDKESMVEKINTLQNELTASMEEIKSREDKKSLLESLVKTLEHENSVLLSKKEEL 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,895,929
Number of Sequences: 59808
Number of extensions: 381950
Number of successful extensions: 1178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)