Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120441.Seq
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 31 0.68
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 31 0.68
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 31 0.68
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 31 0.68
Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z48582-5|CAA88467.3| 377|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81059-5|CAJ15164.1| 176|Caenorhabditis elegans Hypothetical pr... 29 2.7
U21318-1|AAC46669.1| 457|Caenorhabditis elegans Hypothetical pr... 29 4.8
AC024746-14|AAF60406.1| 227|Caenorhabditis elegans Hypothetical... 29 4.8
AC024746-13|AAF60407.2| 480|Caenorhabditis elegans Hypothetical... 29 4.8
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 453 QRDDGRAQSKRAAPRGVGNAKDVILTRLNTLLSE 554
+++ GR+ + AP+G + ++I R+N+LLSE
Sbjct: 553 RKNTGRSDRREEAPKGARSLDEIINNRINSLLSE 586
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 453 QRDDGRAQSKRAAPRGVGNAKDVILTRLNTLLSE 554
+++ GR+ + AP+G + ++I R+N+LLSE
Sbjct: 639 RKNTGRSDRREEAPKGARSLDEIINNRINSLLSE 672
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 453 QRDDGRAQSKRAAPRGVGNAKDVILTRLNTLLSE 554
+++ GR+ + AP+G + ++I R+N+LLSE
Sbjct: 641 RKNTGRSDRREEAPKGARSLDEIINNRINSLLSE 674
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 453 QRDDGRAQSKRAAPRGVGNAKDVILTRLNTLLSE 554
+++ GR+ + AP+G + ++I R+N+LLSE
Sbjct: 639 RKNTGRSDRREEAPKGARSLDEIINNRINSLLSE 672
>Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical
protein F11F1.5 protein.
Length = 246
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Frame = +3
Query: 501 VGNAKDVILTRLNTLLSEITD---SLPDLTLMLDKLAEQL----VE---AINTMQQTQRN 650
+ N I T + LL+E+ D SLPD+ L K+ + +E AIN ++ T +
Sbjct: 159 LNNLISTIFTLIKQLLNEVADILQSLPDILGKLSKIVDDKNLTSIEKNNAINQLKGTNKI 218
Query: 651 ELNNTNSILTNL 686
ELN I+T L
Sbjct: 219 ELNTIIFIITQL 230
>Z48582-5|CAA88467.3| 377|Caenorhabditis elegans Hypothetical
protein F27E5.5 protein.
Length = 377
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -1
Query: 376 EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 284
E+ AR IFVAV+A MN+TA+ T ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214
>Z81059-5|CAJ15164.1| 176|Caenorhabditis elegans Hypothetical
protein F11F1.8 protein.
Length = 176
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 522 ILTRLNTLLSEITDSLPDLTLMLDK---LAEQLVEAINTMQQTQRNELNNTNSILTNL 686
+L + +L + D L DL+ ++D + + ++AIN ++ T + ELN I+T L
Sbjct: 103 LLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAINQLRGTNKIELNTIIFIITQL 160
>U21318-1|AAC46669.1| 457|Caenorhabditis elegans Hypothetical
protein K03H9.3 protein.
Length = 457
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 613 TNCSANLSNMSVKSGNESVISE-SNVFNLVK 524
T CS +LS SVK NE+++ S+++ L+K
Sbjct: 61 TECSFDLSVASVKGPNEAIVKALSSIYQLIK 91
>AC024746-14|AAF60406.1| 227|Caenorhabditis elegans Hypothetical
protein Y110A2AL.12b protein.
Length = 227
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 439 FLELSNVMTGVRNQNVQLLAALETLKMLF 525
F +SNV+TG+ N + L+A+L TL F
Sbjct: 185 FFLVSNVLTGLVNSRLMLIASLRTLPSPF 213
>AC024746-13|AAF60407.2| 480|Caenorhabditis elegans Hypothetical
protein Y110A2AL.12a protein.
Length = 480
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 439 FLELSNVMTGVRNQNVQLLAALETLKMLF 525
F +SNV+TG+ N + L+A+L TL F
Sbjct: 438 FFLVSNVLTGLVNSRLMLIASLRTLPSPF 466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,622,608
Number of Sequences: 27780
Number of extensions: 295812
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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