Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120441.Seq
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06140.1 68415.m00675 hypothetical protein                          30   1.5  
At5g34358.1 68418.m04025 hypothetical protein                          29   3.4  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At4g18240.1 68417.m02709 starch synthase-related protein contain...    28   5.9  
At3g27150.1 68416.m03396 kelch repeat-containing F-box family pr...    28   5.9  
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    28   7.8  

>At2g06140.1 68415.m00675 hypothetical protein 
          Length = 633

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +3

Query: 522 ILTRLNTLLSEITDSLPDLTLMLDKLAEQLVEAINTMQQTQRNELNNTNSILTNL 686
           I +R+  + +E  +   +LT+ L+ + E LVE  NT+   Q  ++ + N+ + N+
Sbjct: 73  INSRMTEMRAEFGEKFDNLTIRLENMGEALVEINNTLLNHQ-EDIQDQNTRMVNV 126


>At5g34358.1 68418.m04025 hypothetical protein
          Length = 116

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 354 IRRAGKNSSSKRHVDEQRQPNKS--QPN*SIFRIVQRDDGRAQSKRAAP 494
           +RR+G  SS+ R  D   QP  S  +P   I  +  +++GR +   A P
Sbjct: 21  VRRSGSTSSTARRADRIDQPRASSFEPREVISDLRVQEEGRGEHPHARP 69


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 44   LLFTIPSKHRKMINDAG--GSCHNTVKYMVDIYGASVLI 154
            LL T PS   ++I +    G CHN +KY+  +Y   +++
Sbjct: 932  LLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970


>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +3

Query: 525 LTRLNTLLSEITD---SLPDLTLMLDKLAEQLVEAINTMQQTQ--RNELNNTNSIL 677
           +++L+TL  E TD    +  L L+LD+  +Q  +A+  +QQ Q  RN+++     L
Sbjct: 341 VSQLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQQNQDLRNKVDKIEESL 396


>At3g27150.1 68416.m03396 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 422

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 102 VITRSNTWWTFTERPF*FCERLARLPTS-C*AHLLQTIICA-TFTVVADHDHAEITF--S 269
           +++  +T WT  ++ F  C++L  LP+  C  H  +  +CA T  +V   +   I     
Sbjct: 126 MLSSGDTCWTMFDKGFGNCQKLPELPSDICFLHGDKESLCAGTHLIVTGKEEKSIALWRY 185

Query: 270 SRQTSFAISVPV*IAVTFIVSQARTATNIRRAG 368
             +TS     P  I    + + A   T +  AG
Sbjct: 186 ELETSKWFKGPAMITPRILFASATCGTVVFVAG 218


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 101 CHNTVKYMVDIYGASVLILRTPC 169
           CH+T KY+   YG  +L+  T C
Sbjct: 857 CHDTAKYVSKRYGCDILLEDTRC 879


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,401,474
Number of Sequences: 28952
Number of extensions: 261348
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)