Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120440.Seq
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11580.1 68418.m01350 UVB-resistance protein-related / regula...    28   5.1  
At3g51440.1 68416.m05634 strictosidine synthase family protein s...    28   6.8  

>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
           of chromosome condensation (RCC1) family protein
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to rjs protein (GI:3414809)
           [Mus musculus]; similar to HERC2 (GI:4079809) [Homo
           sapiens];similar to UVB-resistance protein UVR8
           (GI:10177674) {Arabidopsis thaliana}
          Length = 553

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 204 RQREQTVATFTNRNLLTIYDI 142
           R R QTV TF  ++ LT+YDI
Sbjct: 248 RARPQTVETFNQKSGLTVYDI 268


>At3g51440.1 68416.m05634 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088
          Length = 371

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 308 LFFCNLSPILVDLTLYKM 361
           LFFC + P+L+ +TLY++
Sbjct: 10  LFFCIIVPLLISITLYQL 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,243,949
Number of Sequences: 28952
Number of extensions: 154318
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)