Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120439.Seq
         (829 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.9  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   5.2  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   5.2  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   5.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   9.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +2

Query: 62   PAAAPRTCCSWTTATLPRCRSPRCGRCWR---SSSPTCRPSPARSSL 193
            P   P T  SW   T P  R P     W+   ++S T RP+   S L
Sbjct: 1157 PGHKPSTS-SWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTVSQL 1202


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 260 QGSRRPAARPGL 295
           QG RR AARPG+
Sbjct: 38  QGGRRRAARPGV 49


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = +2

Query: 86  CSWTTATLPRCRSPRCGRCWRSSSPTCR--PSPARSSLKISRNKQRP 220
           C W    +P C     GR            P+P     K+SR K RP
Sbjct: 222 CDWVR-NVPECADWYKGRLTDEQLKELENPPTPKPRPTKVSRRKPRP 267


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 503 IF*LMVRFIWYQHQQFDVFKIQLSLLESNNLYFF 604
           +F L+  F+    Q   +    L LLE+N L+FF
Sbjct: 59  LFTLLGTFLISGFQMQKIATKGLDLLEANRLFFF 92


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 503 IF*LMVRFIWYQHQQFDVFKIQLSLLESNNLYFF 604
           +F L+  F+    Q   +    L LLE+N L+FF
Sbjct: 59  LFTLLGTFLISGFQMQKIATKGLDLLEANRLFFF 92


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
 Frame = +2

Query: 8   CRPPPNGTERWCWNRF----WGPAAAPRTCCSWTTATLPRCRSPRCGRCWRSSSPTCRPS 175
           C+P   G+   C NR       P     TC   TT     C     G+        C  +
Sbjct: 49  CKPGFTGSN--CQNRINLCDSSPCLNGATCQDHTTHYTCHCPYGYTGKDCGEYVDWCSTN 106

Query: 176 PARSSLKISRNKQRPRCL 229
           P  +     +NK + +CL
Sbjct: 107 PCENQATCVQNKNQYQCL 124


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
          transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 60 PQNLFQHHRSVP 25
          PQ ++ HH+++P
Sbjct: 60 PQEVYYHHQTIP 71


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
          protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 60 PQNLFQHHRSVP 25
          PQ ++ HH+++P
Sbjct: 60 PQEVYYHHQTIP 71


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
          protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 60 PQNLFQHHRSVP 25
          PQ ++ HH+++P
Sbjct: 60 PQEVYYHHQTIP 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,822
Number of Sequences: 336
Number of extensions: 4155
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)